Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3322 ATGTCGTATTTTGCCCCTGCCCCCGCTCCTACATCTCCGCCCTCGCCGCCTGAAACTGCTGGTCCTCCATCCCCGCCGTCGCCTGCTCCGACATCTCCGCCACCCCCGCCGTCGTCCGGCCCTGCTCCTGCTACATCTCAGCCACCGCCTTAtactcctcctcctccacctccGCCTCCGTCGAAGTTGTCGATCGGCGTCATTGTCGGGATTGCCGTGGGAGTTGTGGCAATCCTTCTACTATTTAGCATTTTGTTGTACTTATATTTTAGGAGGAGGAAGAATATTAGCAGAAGACGTGAAGAACAAACCTGTTGCCTCTTTTTTAAGTGGAACAGGCCGTCGCACGttttcaaaatcacTTTTTGTTCTTTCATGCATGATCGATCACACCCTCCACGTCTTGCACAGGGGTGCCCACGTTTCAATGTTCTCCCTCCTTGGACGTTTAATTATGAGGAGTTGGCACGGGCAACGGATGAGTTCTCTGATGCTAACTTGCTGGGAGAAGGTGGGTTTGGACATGTGCACAGAGGAGTTCTTCCCAACGGTAAGGAGGTGGCGATCAAGCAGCTAAAGGCCGGAAGTGGACAAGGGGATCGTGAATTCCAAGCTGAAGTTGACATAATTAGCCGAATTCATCACAAGCATCTTGTTTCTTTGGTCGGATACTGCATCACCGGGATTCACAGGCTCCTTGTTTACGATTTTGTTCCTAACAAAACCCTCCAGTTCCATTTAcatggcatatatatatatatgcgcaTCTCTCTCCGATCCATCCGCTTAAAAGGGAAACCTGATATGGATTGGCCAACAAGACTGAGAATTGCTTTAGGAGCTGCAAAAGGACTCGCGTATCTTCACGAAGATTGTCAACATAAGATTATCCACCGTGATATCAAAGCTGCTAACGTActtcttgattttaatttcgAAGCAAAGGTTGCTGATTTTGGTCTCGCAAAGTTATGTTCTGACAACAATTCTCATGTCTCTACACGAGTGATGGGAACACTCGGGTATCTGGCTCCTGAATATGCTTCAAGTGGAAAACTCACTGAGAAATCAGATGTGTACTCCTTTGGAGTAATGCTCTTGGAGTTAATTACTGGATGTCGACCACATGTTTCAAATGATCCTTCCATAGAGGATAGTTTGGTAGACTGGGCAAGACCTTTACTCACACCTtcattaaaggataaaatttttgatattctggCTGATCCAAGGCTCCATAATGAATATGACCCCAATGAGATGACTTGCATGGTGGCATGTGCCGCGTCTTCCATAAAATATTCACCAAAAGATCGACCAAGGATGAGCCAGGTAAATCACAGAACAAGAGTAGCATTGAGACGAAACCGGCATGATAAGGCAACACTAGAACCATGTGTCGGAGACGCAACAGAGCATTGTGGCGACGGTTCGCGAAAACGATTTGCGGTGGGGAGGCGCGAAAGCTACGAATGGCGGGGACACAGAGGACAAAGGTTTGACAGAGGTGAAGGATATGGTGATATTCATTGA 1533 0.4494 MSYFAPAPAPTSPPSPPETAGPPSPPSPAPTSPPPPPSSGPAPATSQPPPYTPPPPPPPPSKLSIGVIVGIAVGVVAILLLFSILLYLYFRRRKNISRRREEQTCCLFFKWNRPSHVFKITFCSFMHDRSHPPRLAQGCPRFNVLPPWTFNYEELARATDEFSDANLLGEGGFGHVHRGVLPNGKEVAIKQLKAGSGQGDREFQAEVDIISRIHHKHLVSLVGYCITGIHRLLVYDFVPNKTLQFHLHGIYIYMRISLRSIRLKGKPDMDWPTRLRIALGAAKGLAYLHEDCQHKIIHRDIKAANVLLDFNFEAKVADFGLAKLCSDNNSHVSTRVMGTLGYLAPEYASSGKLTEKSDVYSFGVMLLELITGCRPHVSNDPSIEDSLVDWARPLLTPSLKDKIFDILADPRLHNEYDPNEMTCMVACAASSIKYSPKDRPRMSQVNHRTRVALRRNRHDKATLEPCVGDATEHCGDGSRKRFAVGRRESYEWRGHRGQRFDRGEGYGDIH 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3322 510 Gene3D Transferase(Phosphotransferase) domain 1 254 466 - -
Ssu5g3322 510 CDD STKc_IRAK 168 448 - -
Ssu5g3322 510 SUPERFAMILY Protein kinase-like (PK-like) 141 447 IPR011009 -
Ssu5g3322 510 PRINTS Proline rich extensin signature 45 62 - -
Ssu5g3322 510 PRINTS Proline rich extensin signature 26 42 - -
Ssu5g3322 510 PRINTS Proline rich extensin signature 5 26 - -
Ssu5g3322 510 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 445 - -
Ssu5g3322 510 MobiDBLite consensus disorder prediction 1 58 - -
Ssu5g3322 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Ssu5g3322 510 ProSiteProfiles Protein kinase domain profile. 162 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3322 510 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 5 445 - -
Ssu5g3322 510 SMART serkin_6 162 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3322 510 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Ssu5g3322 510 Pfam Protein tyrosine and serine/threonine kinase 166 445 IPR001245 GO:0004672|GO:0006468
Ssu5g3322 510 MobiDBLite consensus disorder prediction 7 58 - -
Ssu5g3322 510 Gene3D Phosphorylase Kinase; domain 1 139 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3322 Ssu-Chr5 82589537 82597275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3322 37 445 Trihelix Transcription Factor Family AT5G38560 47.418 4.33e-124 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu5g3322 PK_Tyr_Ser-Thr 6.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3322 - - hbr:110636158 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3322 5 82589537 82597275 Ssu5g3322 5 82589537 82597275 ECH