Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3319 ATGCCTTCCCTCTCTATCTTCCCAACGTCACTGCCATCGCTTCAAAACCCTAACTTGACCCATGCCCACCTCTCCAAATTCTCCAATTTCCGTTTAAATTCAACGGTTCCCTTAACACCACTCCGCACTTTTCGCCGCAGAATCCTCTGCAAGGCGTTGAGGGATTCCGGCGAGGACATCAAGGCGGTGCTGAAGTCCGACGATGGgggcggcggcggaggaggcGACGGCGACGGTGGAGGTGACCGGGATGCGGAGAAGAAAGAGGGGCCTTTGCCGGAGTGGTTGAATTTCACTACTGATGACGCCAAAACGGTGCTTGCGGCTATCGCAATATCGCTTGCGTTTCGCACGTTCGTGGCGGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCCACGTTTGATGTTGGAGATCGAATTGTTGCTGAGAAGGTTTCATACCATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTTAAAAGCCCTCCAGTTCTTCAAGAAGTTGGATATAGTGATGATGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGAGTTGAGAGGAATGAAGAGTACATTTTTGAACCACCTGCTTATGAGATGAAACCCACACGTGTGCCAGAGAACTACGTCTTTGTGATGGGAGACAACCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCCTGCCAGCCAAGAACATCATAGGTAGATCAGTACTTCGCTATTGGCCGCCAAATAGGATTGCCGGCACAATTTCTAAGGATAGTTGCCCCGTTGAAACCACGCAGGAGAGTGTGGAAACTGCTCTACCATCTCAATGA 873 0.4731 MPSLSIFPTSLPSLQNPNLTHAHLSKFSNFRLNSTVPLTPLRTFRRRILCKALRDSGEDIKAVLKSDDGGGGGGGDGDGGGDRDAEKKEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYHFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEEYIFEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVLRYWPPNRIAGTISKDSCPVETTQESVETALPSQ 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3319 290 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 85 272 - -
Ssu5g3319 290 PANTHER SIGNAL PEPTIDASE I 85 272 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu5g3319 290 ProSitePatterns Signal peptidases I serine active site. 128 135 IPR019756 GO:0004252|GO:0016021
Ssu5g3319 290 CDD S26_SPase_I 122 254 IPR019533 GO:0004252|GO:0006465
Ssu5g3319 290 Pfam Signal peptidase, peptidase S26 103 260 IPR019533 GO:0004252|GO:0006465
Ssu5g3319 290 TIGRFAM sigpep_I_bact: signal peptidase I 104 262 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu5g3319 290 ProSitePatterns Signal peptidases I signature 3. 227 240 IPR019758 GO:0004252|GO:0016021
Ssu5g3319 290 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 135 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu5g3319 290 PRINTS Bacterial leader peptidase 1 (S26A) family signature 178 190 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu5g3319 290 PRINTS Bacterial leader peptidase 1 (S26A) family signature 222 241 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu5g3319 290 MobiDBLite consensus disorder prediction 63 94 - -
Ssu5g3319 290 Gene3D Umud Fragment, subunit A 116 274 - -
Ssu5g3319 290 SUPERFAMILY LexA/Signal peptidase 117 266 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3319 Ssu-Chr5 82510189 82513374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3319 131 261 MADS-box Gene Family AT1G29960 31.818 7.25e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3319 K03100 - gmx:100815810 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3319 5 82510189 82513374 Ssu5g3319 5 82510189 82513374 ECH