Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3315 ATGTCTAGATCATTTCTGATATGTAATGATCCAAAAGGAGTAGTAGAATGTGGGACAATCAGGAAATACAGGACTCGTTCTCACACAATGAAGGACAAGACAAAAATCCAGAAGACAACTGAAAACTTGGAGACATCCTTCATGAACAAAAGAcacaaagaagagaagaaggtcCCAAAAGGATGCGATGGAAATCTCATTGGTCCATCATCTTTGCAGCTCACACAGGTCTCTAGAGGGGATCAAAGTTTGAACAACATGATAGATTCATGGTCTAGAGATCTTATGTATGATGGAAAGTCTGAAGATATTGCAAAAGGTATTTTAAAAGGAGCTCTTGGTCTGCAAGATTCTCTCTTCATGCTTCGCAAGTTGCAAGAGGCCTCACCACATACAGTTCCTTTTAGGAGAAAACAGACTAAGAAACCTGAAAGAGACAGAATTGATGCAAAAATGATCGGTAGAACGCAGGCTAATCCATTTGGGGAACAAAGTAATCCAAATGGGTTTCAAAGACCCCAACCTTCTGCTGGCGGTTCTTCAGGTAATTGCAAAGAGGAACTTCAGAAGGTGATTAAGGAGAGTTTGGTTAGGCAAAATATGTTTCCAAAGATGACCAGTGAAGGATTGGATTCAGCTTCAGAAACTTTTTCCACAAGCCCGAGCCAATCTTCTGGGGTCAGGACTAGCAACCTTTGTGATCCTTCTTTCTCAGTAATAGCTTCAAAGATGGAAAGAGGACCTAGCCTAGTTGTCAAGCTGATGGGTTTAGAAGAAGCCCCCTCAAAATCATTTCCAGCTGTTAAGCAGAAACAGTTGGATGCTGAGATAGTTATAAGAAAGAATGATTCTATAGCTGAGAAGGTTAATCCAGAACAAAAGGCCCTGAGGGAAACTCTTGACACCATGCATTTCAAACAACTTTTGAAGAAGAGTTTTGTCAAAGAGCCTAAGCTTCATGAGTATCATTTCAATGATACCAATTCCAAGCAGTTTGATGATTTACCTCACATTGCACTTATGAAACCTCAATGTACTCTTTACCAGGAATCAGTAAAAAGTACCTATATGCCAGTTCCTCCAAAGGAGTTATCCATAACAAAACTGAAAGCAGAAATAGCCCCTTCCAAAACTATCAAACATAGAAAAGGTTCCAGCTCCACCAACATgggaaaagaaatggaaaaagtTGTCAGCAAACGGCTTAACGAAGAGGAAGGACCTAAATTTCTCAAAGAGGTTACGAAACTGAATGCAAAAGGAATCAATCCTACTAAAGAATCATCAGGTAAGGTAAAACTGTGTTGTCACATTGTTCACACATCACAGGTAAATCAgacaattgataaaaaatggaAGGCACCGACCATTAGAAGAAAACAGCCTGAAAAGGATATCTCAGAACCTCCAATTGTGACAATACTTAAATATCAACGAGAAACCACCTCCACAAAATTGAGGAAGCTAAAAGTGGGTCCAGAATGGACAAGAATGAGATTTCCTGCCTAA 1509 0.383 MSRSFLICNDPKGVVECGTIRKYRTRSHTMKDKTKIQKTTENLETSFMNKRHKEEKKVPKGCDGNLIGPSSLQLTQVSRGDQSLNNMIDSWSRDLMYDGKSEDIAKGILKGALGLQDSLFMLRKLQEASPHTVPFRRKQTKKPERDRIDAKMIGRTQANPFGEQSNPNGFQRPQPSAGGSSGNCKEELQKVIKESLVRQNMFPKMTSEGLDSASETFSTSPSQSSGVRTSNLCDPSFSVIASKMERGPSLVVKLMGLEEAPSKSFPAVKQKQLDAEIVIRKNDSIAEKVNPEQKALRETLDTMHFKQLLKKSFVKEPKLHEYHFNDTNSKQFDDLPHIALMKPQCTLYQESVKSTYMPVPPKELSITKLKAEIAPSKTIKHRKGSSSTNMGKEMEKVVSKRLNEEEGPKFLKEVTKLNAKGINPTKESSGKVKLCCHIVHTSQVNQTIDKKWKAPTIRRKQPEKDISEPPIVTILKYQRETTSTKLRKLKVGPEWTRMRFPA 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3315 502 MobiDBLite consensus disorder prediction 158 183 - -
Ssu5g3315 502 MobiDBLite consensus disorder prediction 207 230 - -
Ssu5g3315 502 MobiDBLite consensus disorder prediction 156 185 - -
Ssu5g3315 502 PANTHER OS01G0228800 PROTEIN-RELATED 1 496 - -
Ssu5g3315 502 PANTHER OS01G0228800 PROTEIN 1 496 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3315 3 207 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 34.286 1.61e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3315 - - gmx:102667535 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3315 5 82474516 82476024 Ssu5g3315 5 82474516 82476024 ECH
Ssu5g3316 5 82476163 82477605 Ssu5g3315 5 82474516 82476024 PCT