Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3311 ATGGGGGAAGGTGAAGGTGAAGGTGAGGGGAGTGATTGCGCTCCCAATAATGTCTCAAACGACGTCGTTGCGAATGCGCTGTTGCCGTCCGATGTTCCCACCAAGAAGCTTGCCAGGCAGCTCGATTTTACCGGCTTCGGCGGGATGCAGGCGGCGGCGGCGGCTGCGCCTTCGTCGCAGCCGCCTCCTGCTTCCGTCAGGGTTGGGAAACCAGAATCTCCAAAATCGAGATCGAGGCCTGGCTTTGAAATTAAAGAAGCTACTCCAAAGAAACAGAAGCAGTGCAATTGTAAGCATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGGTGCAACTGTGTCAATTGTTATAACAAtgtggaaaatgaagctgctagaCGAGAAGCGGTTGAAGCTACTTTGGAACGCAATCCAAATGCATTTAGGCCAAAAATTGCGAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAGTTTTGATATTGGGAAAGCACAACAAGGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAAGCTTTGTTTCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCAGCCAATGCCGCTATAACTGGAGCTATTGGTTCCTCTGGTTATTCATCACCACCaatatcaaagaaaagaaaaggtcaaGAACTCTTATTTGGCCAAACCGTCAAGGATCCATCAGTTGGCAGGCTGGGACAACAGGCGAACAATGTCAGAGTTCCTGCACCCTCCTCATCCTTGTCTCCTATGCCAAGTGCTCGTGTTGGACCTGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAGACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACATCTCTTGCTTCTTCAACTCAGGAGCAAATGCCAAGCCAAAAGGAAGCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTCAAGTGCAAACCAAACAGATAAAATCAGCCCAGATAACTCTTGTTCAGATGGTGCTGATGTCCCTAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGTGATGAGCAAGATACAATGTTCATGACTGCTGCCTCCCCTGTTGGATCAAGGCCGCATGCTTGCACCACATCTTTGCAACCGCCTTATGGACAAGGAATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTAGAGATTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCATTTGCCAGAAGTGAATTAGAGAGTCAAAAGGACCCAAACATCAATTGTAATGGAAATGCCAGTACGGAGACAGCGCATCAGCAGGGAGCCACTAATAAGGTTGTTGCCAAAGCTGCAGGCAACTCCGTTACTTCTACATCATTGTACCCTGGTAGTCTTGTTCCTGACAATGGGGAAACTTATCCGAAGGTTGAAAAATAG 1683 0.4421 MGEGEGEGEGSDCAPNNVSNDVVANALLPSDVPTKKLARQLDFTGFGGMQAAAAAAPSSQPPPASVRVGKPESPKSRSRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGQTVKDPSVGRLGQQANNVRVPAPSSSLSPMPSARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDQTETSLASSTQEQMPSQKEANVEKAMADDDCSSANQTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPVGSRPHACTTSLQPPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSFARSELESQKDPNINCNGNASTETAHQQGATNKVVAKAAGNSVTSTSLYPGSLVPDNGETYPKVEK 560
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3311 560 MobiDBLite consensus disorder prediction 538 560 - -
Ssu5g3311 560 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 57 533 - -
Ssu5g3311 560 MobiDBLite consensus disorder prediction 389 403 - -
Ssu5g3311 560 ProSiteProfiles CRC domain profile. 91 215 IPR005172 -
Ssu5g3311 560 MobiDBLite consensus disorder prediction 353 422 - -
Ssu5g3311 560 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 178 212 IPR005172 -
Ssu5g3311 560 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 92 127 IPR005172 -
Ssu5g3311 560 PANTHER TESMIN/TSO1-RELATED 57 533 IPR028307 -
Ssu5g3311 560 MobiDBLite consensus disorder prediction 51 83 - -
Ssu5g3311 560 SMART CXC_2 90 130 IPR033467 -
Ssu5g3311 560 SMART CXC_2 175 216 IPR033467 -
Ssu5g3311 560 Coils Coil 125 145 - -
Ssu5g3311 560 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu5g3311 Ssu-Chr5 82430669 82436639 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3311 32 501 CPP Transcription Factor Family AT4G29000 58.206 0.0 568
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Ssu5g3311 TCR 2.9e-12 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3311 - - gmx:100786353 965.681
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3311 5 82430669 82436639 Ssu5g3311 5 82430669 82436639 ECH