Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3310 ATGGATCCTCCACCGAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCGAAGTACGAGGTGATGGAGCGGGTCGGGTCAGGAGCCTACGCCGACGTGTACCGCGGCCGTCGCCTTTCCGACGGCCTCACCGTGGCCCTGAAGGAAATCCACGACTACCAGTCGGCGTTCCGAGAAATCGACGCGCTGCACCACCTGCAGGGCGCCCCAAACGTCATCGTTTTGCACGAGTACTTCTGGCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCCACCGTCATCGCCGACGCCGCCAAGGCCAACCAAGCGCTCCCCGCCGGCGAACTCAAACGCTGGATGATCCAGATTCTCTCCGGCGTCGATGCCTGTCACCGCCACATGGTCCTCCACCGAGATTTGAAGCCCTCCAATCTCTTAATTTCCGAACACGGCCTCCTCAAGATCGCAGATTTTGGACAGGCAAGGATTCTCACTGAGCCTGGATTTGATGCTTCTAATAATCAAGAAGAATATTCTAGAGTTTTAGATGACATTGATAATAAGGATACTATTACTAACACACACGATGGAAATGCAACATGCACCACAAGTGACAAAGATAGGGAAGAGGAAGAACTTGGTTGTTTCACATCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGGTCCAGAGACTATGGCTTGGAGGTTGATTTGTGGTCCTTGGGATGCGTCATTGCGGAGCTTTTAACTCTGCAACCTTTGTTTCCTGGAACTGCTGATATTGACCAACTTAGTAGAATCATTGGTGTTTTGGGTAACCTTGATGAGAGTGCTTGGGTTGGTTGTTCTAAGCTTCCTGATTATGGGATAATCTCGTTTAGCAAGGTGGAGAACCCTGCTGGTCTTGAGGCCTGTTTGCCTAATCGTTCACCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCGGCTAAGAGGGCTACGGCGATGGAGCTGCTTCATGACAAGTACTTTAGTGAAGAGCCTCTTCCTGTTCCTGTAGAAGAGCTGCGAGTTCCTCTGACCAGAAAGGGACAAGATGGGGATTCCCCTGGTGGGTGGGATGATTATGAAGACATGGGTTCTGATTCTGATTTTGATGAGTTTGGCCCTCTCAATATCACCAGGACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1224 0.5139 MDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALHHLQGAPNVIVLHEYFWRDDEDAVLVLEFLRTDLATVIADAAKANQALPAGELKRWMIQILSGVDACHRHMVLHRDLKPSNLLISEHGLLKIADFGQARILTEPGFDASNNQEEYSRVLDDIDNKDTITNTHDGNATCTTSDKDREEEELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCVIAELLTLQPLFPGTADIDQLSRIIGVLGNLDESAWVGCSKLPDYGIISFSKVENPAGLEACLPNRSPDEVALVKRLVCYDPAKRATAMELLHDKYFSEEPLPVPVEELRVPLTRKGQDGDSPGGWDDYEDMGSDSDFDEFGPLNITRTGTGFSIQFP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3310 407 SUPERFAMILY Protein kinase-like (PK-like) 13 352 IPR011009 -
Ssu5g3310 407 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Ssu5g3310 407 PANTHER CELL DIVISION PROTEIN KINASE 12 354 - -
Ssu5g3310 407 Pfam Protein kinase domain 20 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3310 407 PANTHER CYCLIN-DEPENDENT KINASE 10 12 354 - -
Ssu5g3310 407 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Ssu5g3310 407 Gene3D Transferase(Phosphotransferase) domain 1 107 349 - -
Ssu5g3310 407 ProSiteProfiles Protein kinase domain profile. 20 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3310 407 SMART serkin_6 20 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3310 407 MobiDBLite consensus disorder prediction 362 393 - -
Ssu5g3310 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3310 Ssu-Chr5 82416551 82418755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3310 4 407 Core Cell Cycle Gene Families AT4G28980 56.842 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Ssu5g3310 Pkinase 3.6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3310 - - gmx:100776564 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3310 5 82416551 82418755 Ssu5g3310 5 82416551 82418755 ECH
Ssu5g3310 5 82416551 82418755 Ssu5g3310 5 82416551 82418755 PCT