Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3307 ATGGCAGACTTCGATAACCCGCTGCAAGGAAGTGGGAAACATGCACCTCCCAAGGACTTTGTGTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACCTGTCCTATCACTCGCCAGAAGCTGCAAAACACCCAGCTACCCAAAACAAATTATGTGCTCAAGCGACTAATCGCAAGCTGGAAAGAACGGAACCCCCACTTGGTCCCACCGCCATATGAGAGTCCATACGAAGATACTGAGGCAGTTGTGAAGTCAACAATGCCTTCAACTTCTCCTAATAGCGTTATAACACAAGCCACAGTTGATGGGATGATGAGTGAGTTGCGCTGTGCAATCAATAACCTGTATATGTCAGAGGTTCTCCAGGAATCTGAAATGGCCGTGCTTCAAATTGAGAAGTTCTGGAGAGGAGTGAATCTAGGAGTGGATATCCACAGCATGCTATCAAAACCTGCCATAATCAACGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGGTCTAGGGACAATGCTGTTATTCAGACTCTTACACGTGTGGACACTGACGTGGAATGTATCATGGCTCTTTTCATGAACGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTCCTAAACCCTGCCAATGTGAATCTTGCAGAGATGGCCATAGTGGAGTCTCTCATAACGgttttcaataaaaaagagGAAGACTTGGTTAAGATGTGTTCAAAACCCAAAACAGCTGCAGTGCTTTTACTTGCACGGATTATTGAAGCAGTGAAGAGATAA 882 0.4456 MADFDNPLQGSGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKERNPHLVPPPYESPYEDTEAVVKSTMPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIEKFWRGVNLGVDIHSMLSKPAIINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNAVIQTLTRVDTDVECIMALFMNGLTEAVVLLYLLNPANVNLAEMAIVESLITVFNKKEEDLVKMCSKPKTAAVLLLARIIEAVKR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3307 293 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 290 - -
Ssu5g3307 293 Pfam U-box domain 17 87 IPR003613 GO:0004842|GO:0016567
Ssu5g3307 293 ProSiteProfiles U-box domain profile. 15 90 IPR003613 GO:0004842|GO:0016567
Ssu5g3307 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 91 IPR013083 -
Ssu5g3307 293 CDD RING-Ubox_PUB 20 62 IPR045210 -
Ssu5g3307 293 SMART Ubox_2 19 83 IPR003613 GO:0004842|GO:0016567
Ssu5g3307 293 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 290 - -
Ssu5g3307 293 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3307 Ssu-Chr5 82383937 82384818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3307 17 103 U-box Gene Family AT5G42340 45.977 1.89e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3307 - - gmx:100808867 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3307 5 82383937 82384818 Ssu5g3307 5 82383937 82384818 ECH