Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3305 AtGAGTGGGATGGTGTCTGAAGAAGGGAAGGGGGGTATGTGTCAGGTTCAGTCTAAGAAGTTGGAGAACTGGGAGGAACAAATGCTAAGTCAGGCTCCAAGTGCTCCTATTGTTGATGTTAAGCAAGAAACCTCGGTGAACACCTATGTTTATGGGCATGGAAACGAAGAGTTTCAAGCAACAAAGCCAACATGGTCTCAAATAATGCCTGCTTCTTCCCCCAAATCCTGTGTAACAAGTTTCAGCAGCAGCATGCTGGATTTCTCTAACAATAACACTGATGCGAGGCCTCCTCCACCAGATCCATCCTCAGAGTGCAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGTCCACAACTCAGTCGACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCGTTTGGAAAGACTGACACGGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTTGGCAGTGGATCAGGAAACATGAGGCACCAACAATCTGTTCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAGCTAGTGAGCAGgattCTCAAGAAGAACCAAAGAAGGACCTGAGGAGTAGAGGGTTGTGTCTTGTTCCAGTGTCATGCACGCTGCAAGTTGGGAGTGACAATGGAGCTGACTATTGGGCTCCTGCTTTTGGCGGGGGATTTCGGTAG 804 0.4689 MSGMVSEEGKGGMCQVQSKKLENWEEQMLSQAPSAPIVDVKQETSVNTYVYGHGNEEFQATKPTWSQIMPASSPKSCVTSFSSSMLDFSNNNTDARPPPPDPSSECNSTAAGGAFKKARVQPSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYFGSGSGNMRHQQSVQGEKNCLFPEDPGQLLNENCLKRKAASEQDSQEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3305 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 180 IPR036638 GO:0046983
Ssu5g3305 267 MobiDBLite consensus disorder prediction 88 110 - -
Ssu5g3305 267 Gene3D - 126 179 IPR036638 GO:0046983
Ssu5g3305 267 PANTHER OS05G0228400 PROTEIN 1 253 - -
Ssu5g3305 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Ssu5g3305 267 CDD bHLH_AtbHLH_like 128 177 IPR045239 -
Ssu5g3305 267 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3305 Ssu-Chr5 82356199 82359224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3305 20 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 56.075 1.71e-61 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3305 - - gmx:100785156 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3305 5 82356199 82359224 Ssu5g3305 5 82356199 82359224 ECH
Ssu5g3305 5 82356199 82359224 Ssu5g3305 5 82356199 82359224 PCT