Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3301 ATGTCTGAGGGATTGGAAGAGGTTCCTTCAATGAAGGGAGGGTTGAACCTGAAGGCCACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGGGTACTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAGGTTCTGGGAACTGGAATGGGGGATCTGAAGTGGTTTTGGGCAAAGATGCTGCCTTGTTCTCTCCAAGGGGTGTTACTGTTGCCAACTCTCTCACTCTCACTACAACAGACTGCACCAACCAACCAACTGCTTTAGGTGCTTCTGTTCTCAAGGAAACTGTTCCACACTCTCCAAGACCACTGCATGAGAAGAAGCCCCAGGTTTCTGCTCCTGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAGTCTGGATGCCTTTTTGTAAAAGTCAGCATGGAAGGAGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTAGCACTTACAAGGAACTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACTATCAGTCAATGTGGCTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGCGATTGGATGCTAGTTGGTGATGTTCCGTGGGAaATGTTCACTGAGTCTTGCAACAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTGGCACCTAGAGCCGTGGAAAAGTGCAAAAGTCGCAACTAG 858 0.4744 MSEGLEEVPSMKGGLNLKATELRLGLPGCESPEREGVLFKSVVVSGAKRGFSDAIDGGSGNWNGGSEVVLGKDAALFSPRGVTVANSLTLTTTDCTNQPTALGASVLKETVPHSPRPLHEKKPQVSAPAAKAQVVGWPPIRSFRKNSMASQPQKNDADAEAKSGCLFVKVSMEGAPYLRKVDLNSFSTYKELSLALEKMFSCFTISQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCNRLRIMKSSEAIGLAPRAVEKCKSRN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3301 285 ProSiteProfiles PB1 domain profile. 165 267 IPR000270 GO:0005515
Ssu5g3301 285 Pfam AUX/IAA family 20 276 IPR033389 -
Ssu5g3301 285 Gene3D - 159 279 - -
Ssu5g3301 285 PANTHER AUXIN-INDUCED PROTEIN 12 278 - -
Ssu5g3301 285 SUPERFAMILY CAD & PB1 domains 162 266 - -
Ssu5g3301 285 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 278 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3301 Ssu-Chr5 82241593 82244853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3301 168 275 B3 DNA Binding Superfamily AT4G23980 29.630 2.64e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu5g3301 AUX_IAA 9e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3301 K14484 - gmx:100778529 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3301 5 82241593 82244853 Ssu5g3301 5 82241593 82244853 ECH
Ssu5g3301 5 82241593 82244853 Ssu5g3301 5 82241593 82244853 PCT