Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3289 ATGGAACGCATCGTTGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGCTCCTTCGGCGAAATCTACCTCGCGACGCATATTGACACTTTCGAGATCGTCGCCGTCAAAATCGAGAATAGTAAAACAAAGCATCCGCAACTGCTTTATGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCGAACATAAAATGGTCTGGCATAGATGGGGAGGATAATGTGCTTGTTCTTGACTTGCTTGGGCCAAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTATTAATGTTGGCTGATCAAATGatCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACATAGGGATATTAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATCGGGATTCCACTACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGTACTGCCCGATATGCAAGTTGCAATACTCATCTTGGGATTGagCAAAGTCGTCGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTGAAGGCTGCTAcgaagaaacaaaaatatgataaaatatgtcAGAAGAAACTATCGACTCCTATTGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGTCTATTTCGGGACCTATTTGCTCGAGAAGGTTATgaatttgattatgtttttgATTGGACCATTTTAAAGTACCAGCAATCTCAAAAGAATGTAGTGCTCCCTCCATTATCTCCAGTTCCAGGAGCAGGTAACAGCCGTGCAATTCCAATGGATATTGACAACCATCAAGGTCTTAATGCATATTCAGGGCATGTTAAAGAGCGTATTAGAGCAGACGATGCTACTGGTTCTGGTGTCAAAATTCAGTTTAAGTCACCAGTGGGTAAAAATTTGAGTTATGAGAATCCACTTGACAAAAATATTTTTGGAGAAGCAAATATACCCTCTACTTCACATTCTCCTGCTAGTACTTCAAAAAGGAAATCCTTGAAGCCATCCTTGTCTGCTGAAGCTTCCAACCCCGGACATGGGCAAGGCAGTAAAATTGGCCCCTCAAGTAGCTGGATGTCATCTCTGCAGCGCATGTCTTCTGCTAAATGA 1293 0.4114 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGIDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQSQKNVVLPPLSPVPGAGNSRAIPMDIDNHQGLNAYSGHVKERIRADDATGSGVKIQFKSPVGKNLSYENPLDKNIFGEANIPSTSHSPASTSKRKSLKPSLSAEASNPGHGQGSKIGPSSSWMSSLQRMSSAK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3289 430 PANTHER CASEIN KINASE-RELATED 1 415 - -
Ssu5g3289 430 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3289 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Ssu5g3289 430 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3289 430 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Ssu5g3289 430 MobiDBLite consensus disorder prediction 375 430 - -
Ssu5g3289 430 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3289 430 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 415 - -
Ssu5g3289 430 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Ssu5g3289 430 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ssu5g3289 430 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3289 Ssu-Chr5 82125597 82129554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3289 9 234 EF-hand Containing Proteins AT4G23650 28.879 7.28e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Ssu5g3289 Pkinase 5.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3289 K08960 - gmx:100800342 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3289 5 82125597 82129554 Ssu5g3289 5 82125597 82129554 ECH
Ssu5g3289 5 82125597 82129554 Ssu5g3289 5 82125597 82129554 PCT