Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3278 ATGGCTGAGCTACCAAGCTCAGAGATAGAGATAATCACCGGTACCGCTCGTAAGCACTCGTCTTTGGAGGCCCAGTTATCCGGCCCGAATCAGAAGAAGCCCAAGCGGGCCCGAGATAGCAGCAGCAAGCACCCGGTGTACAGAGGGGTCCGAATGCGGGCCTGGGGGAAGTGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACCGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCACTCGCCATCAAAGGCAACTCCACCATTCTTAACTTCCCCGAACTCGCGGGTTCGCTGCCCCGACCCGAGTCCAACTCGCCCCGGGATGTTCAGGCCGCGGCCGCCAAAGCCGCAGCCATGGAGGCTTTCGATCCCCCGGCCACgccgtcgtcgtcgtcgtcttCGTCGTCATTGGCGGTGTCTTCTTCGTCCGGCGGCGAGGACGCGTCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTACCGAGTCTGGGAACGAGTTTCGAAATACCCGACCCGAGTAAGGAGGAGTTGGTGTTTTTTGACCCGGTGGACGGGTGGCCCTATTCTCACCCGTGGTGTCACGGCATTTATGATGACAGGGACTGTGGGGGGTATTTTATTGGGGATCAGATTTCAATGCAGGACTCACAGAGTATGATTCTTTGTGGCTTCGAGGAGGCTTCATTGTGGCAGCATTAA 732 0.582 MAELPSSEIEIITGTARKHSSLEAQLSGPNQKKPKRARDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSTILNFPELAGSLPRPESNSPRDVQAAAAKAAAMEAFDPPATPSSSSSSSSLAVSSSSGGEDASTPEELGEIVELPSLGTSFEIPDPSKEELVFFDPVDGWPYSHPWCHGIYDDRDCGGYFIGDQISMQDSQSMILCGFEEASLWQH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3278 243 MobiDBLite consensus disorder prediction 109 128 - -
Ssu5g3278 243 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Ssu5g3278 243 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Ssu5g3278 243 MobiDBLite consensus disorder prediction 32 46 - -
Ssu5g3278 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 242 - -
Ssu5g3278 243 MobiDBLite consensus disorder prediction 133 163 - -
Ssu5g3278 243 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Ssu5g3278 243 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Ssu5g3278 243 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Ssu5g3278 243 MobiDBLite consensus disorder prediction 1 46 - -
Ssu5g3278 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 242 - -
Ssu5g3278 243 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Ssu5g3278 243 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Ssu5g3278 243 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Ssu5g3278 243 MobiDBLite consensus disorder prediction 136 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3278 Ssu-Chr5 82001118 82001849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3278 30 214 AP2-EREBP Transcription Factor Family AT5G11590 59.474 8.55e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g3278 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3278 K09286 - gmx:100778201 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3278 5 82001118 82001849 Ssu5g3278 5 82001118 82001849 ECH
Ssu5g3278 5 82001118 82001849 Ssu5g3278 5 82001118 82001849 PCT