Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3269 ATGGGTCGTCGTAAGATTGAGATTACGGAGGTGAAGGACCCCAACACGAGGCAAGTTACATTCTCCAAGCGTCGAACGGGTTTATTCAAAAAGGCAAATGAATTATCCATCTTGTGCGGAGCAGAagttgctattgttgtgttcTCTCCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGATGCTGTTGCAGCCAaatttcttcaacaagagcCTGAATCAAATGTTGCCAAACCAAATGATGTCCAAGGAAATGGCCCATCTAATGAAGTTGGTGACGTGGATGCGCTGTATCAACAATTATCCGATGTTGAAGCTCAAATTCGTGAGGAAGAAAAGAAGGGTGCGGAGCTTGATGAGCGACTGAAACAACATGAAGTGACACAACTCTCACAATGTAAAGAATTGCAAGGTTCATATTTAGAGCTCCAGCGTAAGGTGAAGGACTATCTTGATGCGATCGAGGTGTCAAAGTCTATGATGCTCCTTGCACAAGAACCAATAGTCGgattaacaaagaaaagaagaaagaattga 543 0.3959 MGRRKIEITEVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDAVAAKFLQQEPESNVAKPNDVQGNGPSNEVGDVDALYQQLSDVEAQIREEEKKGAELDERLKQHEVTQLSQCKELQGSYLELQRKVKDYLDAIEVSKSMMLLAQEPIVGLTKKRRKN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3269 180 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Ssu5g3269 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 176 - -
Ssu5g3269 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu5g3269 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Ssu5g3269 180 Coils Coil 135 155 - -
Ssu5g3269 180 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Ssu5g3269 180 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Ssu5g3269 180 MobiDBLite consensus disorder prediction 75 89 - -
Ssu5g3269 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu5g3269 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu5g3269 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu5g3269 180 MobiDBLite consensus disorder prediction 75 94 - -
Ssu5g3269 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu5g3269 180 Coils Coil 96 130 - -
Ssu5g3269 180 PANTHER MADS BOX PROTEIN 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3269 Ssu-Chr5 81836896 81837438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3269 1 167 Type I MADS-box Gene Family AT2G34440 38.889 1.99e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu5g3269 SRF-TF 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3269 - - gmx:100791127 274.248