Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3268 ATGGGTCGTCGTAAGATTGAGATTGTGATGGTGAAGGACCCCAACACGAGGCAGGTTACATTCTCCAAACGCCGAACGGGCTTATTCAAAAAAGCGAATGAATTATCCATCTTGTGTGGAGCAGAagttgctattgttgtgttcTCCCCTGGGAACAAGCCTTACTCTTTTGGGCACCCAGGTGTTGATGTTGTTGCGGCCAAGTTTCTTCAACAAGAGCCCAATTCAAACGATGCCAAACCAAACGATGTCCAAGAAAACAACCCATCCAATGAAGAAGTTGGTGACATGGACAGGTTGAATCAACAATTGTCTGATGTTCAGGCCCAAATACGTGAGGAAGAAAAGAAGGGTGCGGAGATTGATGAGCGATTGAAACAACACGAAGTGACACAACTCTCTCAATGTAAAGAATTACAAGATTCATACTCAAAGCTCCAGCGTAGGGTGAAGGACTATCTTGATGCGATCGAGGTGTCGGAGTATATGATGCTCCTTGCCCAAGAACCAGTTGTGGGCATAACAAAACAAGTTActacaaagaaaagaagaaagaattga 561 0.4153 MGRRKIEIVMVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKFLQQEPNSNDAKPNDVQENNPSNEEVGDMDRLNQQLSDVQAQIREEEKKGAEIDERLKQHEVTQLSQCKELQDSYSKLQRRVKDYLDAIEVSEYMMLLAQEPVVGITKQVTTKKRRKN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3268 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu5g3268 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu5g3268 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu5g3268 186 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 178 - -
Ssu5g3268 186 PANTHER MADS BOX PROTEIN 2 178 - -
Ssu5g3268 186 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Ssu5g3268 186 Coils Coil 97 124 - -
Ssu5g3268 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Ssu5g3268 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu5g3268 186 CDD MADS 2 60 - -
Ssu5g3268 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu5g3268 186 Coils Coil 136 156 - -
Ssu5g3268 186 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Ssu5g3268 186 MobiDBLite consensus disorder prediction 74 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3268 Ssu-Chr5 81823382 81823942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3268 1 168 Type I MADS-box Gene Family AT2G34440 40.936 8.25e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu5g3268 SRF-TF 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3268 - - gmx:100791127 296.204