Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3267 ATGCGACACTCTGAGGACGGTCCAATCATAAGCCACAGAATCAGCGGGGAAGGAGTGGGATCAAAGCGGGTGCAGGGTTGTGCGAAGCAGAGGATTGAAAAGAGGCGTGATAAGGAAAAGAAACGTGTGGAAGGAAGATCAATGGAGGGGACAGATGCGTGTGCCATCAACAAAACTTACATTTTCCTCACACGTGTCGCTTTATCATCTCTCCTTTCTACTCCTTTTATCGTctcctctcttctttttctaacCCTCCACTCTCAACTACGACACCGTTGCGTTATGGAGGGGGACGAGCAACTCGAACGATTCGACTCGGAGTTCGCGTCCACGAGTTCGGGCTCCGCCATTTCCTCCACACTCAGCACCGAAGATTTCAGGAACCTCACCAGCTCCGGTGACATTTCCTCCATCAGCAGCGGCTCCGGCGAGATTCCGGCCGTCGCGGTGACCGAGGCGGTTCTCGGGCCGCCGCCACCGCTCCACCGTGCGGGGTCCAATGGCGGCCAGGCGCCGGCTGCCAGGGAGAAGTGCGTGGGAAGGAGTAACAAGGGAGTGAGTTGGGGACACACTTCGGTGATTGGGAGGCGGAGAGAGATGGAGGACGCCGTCGCCGTTATTCCGGGATTCATGTCTCGCACGTGCGATCACGTCGGCGGTTGTACGGCTCCAGGCTCCAGACCCTCCGGCGAGATCGCTCCCGTTCATTTTTTTGGCGTTTACGACGGCCACGGTGGCTCTCAGGCACAGAAAGGGGGTGTGGCGTTCTGA 774 0.5659 MRHSEDGPIISHRISGEGVGSKRVQGCAKQRIEKRRDKEKKRVEGRSMEGTDACAINKTYIFLTRVALSSLLSTPFIVSSLLFLTLHSQLRHRCVMEGDEQLERFDSEFASTSSGSAISSTLSTEDFRNLTSSGDISSISSGSGEIPAVAVTEAVLGPPPPLHRAGSNGGQAPAAREKCVGRSNKGVSWGHTSVIGRRREMEDAVAVIPGFMSRTCDHVGGCTAPGSRPSGEIAPVHFFGVYDGHGGSQAQKGGVAF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3267 257 MobiDBLite consensus disorder prediction 27 45 - -
Ssu5g3267 257 MobiDBLite consensus disorder prediction 25 45 - -
Ssu5g3267 257 SUPERFAMILY PP2C-like 180 250 IPR036457 -
Ssu5g3267 257 ProSitePatterns PPM-type phosphatase domain signature. 238 246 IPR000222 GO:0043169
Ssu5g3267 257 Gene3D - 175 252 IPR036457 -
Ssu5g3267 257 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 170 250 - -
Ssu5g3267 257 MobiDBLite consensus disorder prediction 163 184 - -
Ssu5g3267 257 PANTHER ALPHABET, ISOFORM E-RELATED 170 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3267 Ssu-Chr5 81754588 81755564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3267 189 249 PP2C-type Phosphatase Gene Family AT4G26080 50.000 7.31e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3267 K14497 - gmx:100782634 229.18