Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3266 ATGATGGTCGTGGCTGGTCTGCCTCATTCTGGAAAAGTTTTGGTGGCTAAGTTTTGTGCCAAGCGGATGCACGATGTTATAGCAGAGGAGTGGGACCGAGAAATGGCAGGTGGAACTGAATGGCAGAGAAGGTGGGAAGCCGTATTTGCTAACAGTTTTGAGAGGACTGACAATGAAATCTTATCAGACGCAGTTGCACCAGAAATGGTAGGATCTACTGCCTCTGTGGTAGTTCTATCTGGTTGCCAAATTATTACATCCAACTGCGGCGACTCAAGGGTAGTTCTTTGCCGCAGGACACAAACAATCCCCTTGACAGTGGATCAGAAGCCGGATAGACAAGATGAACTCTTGAGAattgaaggaggaggaggaaaagTCATAAACTGGAATGGAGCTAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGGTGATCGGTACTTGAGGCCATGGATTATCCCGGTGCCAGAAATAACTTTCACAGCAAGAACCGACGAGGATGAGTGCTTAATTTTGGCAAGTGATGGACTCTGGGATGTAATGACCAATGAAGAGGTTGGAGAAGTAGCGCGCCACATTCTTAGAAGGCGCCGCAGATCTTTGTCAATGGAGGAAACATCTCCTGCACAAGTTGTTGCCGACAGCCTGACTGAAATTGCATATGGTAGAAATAGTAAAGATAACATTTCAATCATAGTTGTTGATCTGAAATCAAAGAGAAAACGTCAGCAAAGGCCTCCGTTAATTTCCTAA 759 0.4466 MMVVAGLPHSGKVLVAKFCAKRMHDVIAEEWDREMAGGTEWQRRWEAVFANSFERTDNEILSDAVAPEMVGSTASVVVLSGCQIITSNCGDSRVVLCRRTQTIPLTVDQKPDRQDELLRIEGGGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMTNEEVGEVARHILRRRRRSLSMEETSPAQVVADSLTEIAYGRNSKDNISIIVVDLKSKRKRQQRPPLIS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3266 252 PANTHER ALPHABET, ISOFORM E-RELATED 13 247 - -
Ssu5g3266 252 CDD PP2Cc 15 238 IPR001932 -
Ssu5g3266 252 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 13 247 - -
Ssu5g3266 252 SMART PP2C_4 2 236 IPR001932 -
Ssu5g3266 252 SUPERFAMILY PP2C-like 14 239 IPR036457 -
Ssu5g3266 252 Gene3D - 9 248 IPR036457 -
Ssu5g3266 252 ProSiteProfiles PPM-type phosphatase domain profile. 1 238 IPR001932 -
Ssu5g3266 252 Pfam Protein phosphatase 2C 14 231 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3266 Ssu-Chr5 81744506 81752386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3266 11 248 PP2C-type Phosphatase Gene Family AT4G26080 50.980 1.59e-80 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3266 K14497 - gmx:100793293 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3266 5 81744506 81752386 Ssu5g3266 5 81744506 81752386 ECH