Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3255 ATGTTTTTGTCACGTAATGCAGATTTTCACGAGGCATTTTCTTGTGTCTTAAAAAACCGTGTCTGTGActggattttttttgtttttgtaggtTTCACTTCGCCGTTACCACTTGCACTATTCAAAGACCTCGGTAGCATTTCCCTCACGCGGCCAATGGGGAGAGCCATCAGGTGGTTGAAGGGGTTGTTTGGGATAAAGACAGACAGAGAGCGCAAAGAGAATTCAAATTCTGGCACCAAATGGTGTCACCCAGACAGAGATTCCAGAGGTTTATGTCATAATCCGACCACCATTCCACCCAATATTTCACCTGCAGAGGCTGCTTGGCTGCAATCCTTCTACTCACAAACTGAGAAGGAGCAGAACAAGCACGCCATTGCAGTTGCCGCAGCCACGGCAGCGGCCGCGGACGCTGCCGTGGCTGCGGCTCAGGCTGCCGTGGCCGTGGTTAGGCTAACCAGCCACGGCAACGGCAGAGACACCATGTTTGGTGGGGGACAAGAAAGGTCGGCTGTTGTCAAGATTCAAACCGTGTTTAGAGGATACTTGgcgAGGAAGGCATTGAGAGCCTTAAAAGGATTGGTCAAGTTACAAGCACTTGTGAGAGGGTACTTAGTGCGGAAGCAAGCAGCAGCAACCCTGCATGGCATGCAAGCTCTAATTAGAGCTCAAGCAACAGTAAGGTCTAAGAAATCTCGCAGCCTCGCCAGCACAAAGAATGAAGCACATAGGTTTCAAACACAAGCACGGAGATCCATGGAGAGATTTGATGACATAAAAAGTGAGTACATAGCTCCCATCCACAGCAGAAGGCTATCATCTTCTTTTGATGCCACAATGAATAATAATGCCAACAGTATTGATGGGAGCCCCAAAATAGTGGAAGTGGACACTGGCAGGCCAAAGTCAAGGTCTCGCAGGAGCAACACCTCAATGTCAGATTTTGGCGATGACCCATCATTTCAGACACTTCCTTCTCCTCTCACATTCACTCATTTGTCCATACCAAACCACAGGAATTTCCACGACTCAGAATGGGGCTTAACAGGAGAAGAGTGCAGGTTCTCTACAGCACAAAGCACTCCACGCTTCACCAACTCTTGTAGTTGTGGGTCTATTGTTGCACCTGTGACACCTAAAAGTGTTTGCACCGAAAACTTCATCTATGGGCAGTATCACAATTTTCCAAACTACATGGCCAGCACTCAGTCTTTCAAGGCCAAATTGAGGTCTCATAGTGCTCCAAAGCAACGCCCGGATCCGGGTCCCAAGAAGAAGCTTTCCCTCAATGAGATGATGGAGTCTAGGAGTAGTTTAAGTGGGGCTAAAATGCAAAGGTCTTGCTCACAGATTCAGGAAgctattaattttaagaatgcTGTGATGAGTAAGCTTCAGAAGTCCACAGAATTTGGTAGGGAGACGGACACGAACTTTTCCAACCAGAAGAGGTGGTGA 1461 0.4661 MFLSRNADFHEAFSCVLKNRVCDWIFFVFVGFTSPLPLALFKDLGSISLTRPMGRAIRWLKGLFGIKTDRERKENSNSGTKWCHPDRDSRGLCHNPTTIPPNISPAEAAWLQSFYSQTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGNGRDTMFGGGQERSAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQAAATLHGMQALIRAQATVRSKKSRSLASTKNEAHRFQTQARRSMERFDDIKSEYIAPIHSRRLSSSFDATMNNNANSIDGSPKIVEVDTGRPKSRSRRSNTSMSDFGDDPSFQTLPSPLTFTHLSIPNHRNFHDSEWGLTGEECRFSTAQSTPRFTNSCSCGSIVAPVTPKSVCTENFIYGQYHNFPNYMASTQSFKAKLRSHSAPKQRPDPGPKKKLSLNEMMESRSSLSGAKMQRSCSQIQEAINFKNAVMSKLQKSTEFGRETDTNFSNQKRW 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3255 486 MobiDBLite consensus disorder prediction 306 320 - -
Ssu5g3255 486 ProSiteProfiles IQ motif profile. 193 220 IPR000048 GO:0005515
Ssu5g3255 486 MobiDBLite consensus disorder prediction 284 320 - -
Ssu5g3255 486 Pfam IQ calmodulin-binding motif 196 210 IPR000048 GO:0005515
Ssu5g3255 486 Pfam IQ calmodulin-binding motif 170 190 IPR000048 GO:0005515
Ssu5g3255 486 MobiDBLite consensus disorder prediction 409 444 - -
Ssu5g3255 486 Pfam Protein of unknown function (DUF4005) 362 446 IPR025064 -
Ssu5g3255 486 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 53 470 - -
Ssu5g3255 486 SMART iq_5 168 190 IPR000048 GO:0005515
Ssu5g3255 486 SMART iq_5 191 212 IPR000048 GO:0005515
Ssu5g3255 486 MobiDBLite consensus disorder prediction 414 432 - -
Ssu5g3255 486 ProSiteProfiles IQ motif profile. 169 197 IPR000048 GO:0005515
Ssu5g3255 486 Gene3D - 168 210 - -
Ssu5g3255 486 PANTHER IQ-DOMAIN 5-RELATED 53 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3255 Ssu-Chr5 81583136 81584876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3255 53 445 IQD Protein Family AT3G16490 52.882 4.75e-96 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3255 - - var:108346918 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3255 5 81583136 81584876 Ssu5g3255 5 81583136 81584876 ECH