Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3254 ATGTCAAAtttgcatttcattttctttgttttagttgttattcttcttcTACAAAATCCCAGTGCAACACAATGCCATACCAAGGGAATTCGACCTAAGCCAGGGAATGGGTTATCTACCAATATGACCAGAGCCCAATTTTCAGAACAACAGTTCATGAAATGGGTGAGGTTTGTAGGTGGCCTCAAACATTCTGTCTTTAGGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCCCGGCAAAGGAGGTTTTACCTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATCTTGTGAGAGTGGTAATCAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCAGGCGCAGATAAGACCATTGTTCAATGGGGTGACACTGCTCAAAGCCAGCCACTAGGAACCTATGGTTCTGCAACTTTTGCAGTGAATTCACCTTATTTCATAGCCAAGAACATCACATTTAAAAACACTGCCCCCATTCCAGCACCAGGAGCCGTTGGAAAGCAGGCAGTGGCATTGAGAATTTCAGCAGATACAGCAGTATTCCTAGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATTTGGGTAGGCATTACTATAAGGATTGCTATATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCTCTTTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAGCTTACAGGGGCCCTAACAGCCCAGGGAAGGAGCAGTTTATTAGAAGACACGGGTTTCTCGTTTGTACACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCATTTTCTCGTGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTTCGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAGGCCAAGCCATTTATTTCACTTGGCTATATTGATGGGTCTGAATGGATCAATCTCTCTCTttga 1128 0.4344 MSNLHFIFFVLVVILLLQNPSATQCHTKGIRPKPGNGLSTNMTRAQFSEQQFMKWVRFVGGLKHSVFRTAKNKLFPSHTLHVSKKPGKGGFTSIQAAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADKTIVQWGDTAQSQPLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQAVALRISADTAVFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFISLGYIDGSEWINLSL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3254 375 PANTHER PECTINESTERASE 1 374 - -
Ssu5g3254 375 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 374 - -
Ssu5g3254 375 SUPERFAMILY Pectin lyase-like 76 373 IPR011050 -
Ssu5g3254 375 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Ssu5g3254 375 Gene3D - 77 374 IPR012334 -
Ssu5g3254 375 Pfam Pectinesterase 85 367 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3254 Ssu-Chr5 81571281 81574717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3254 85 374 Carbohydrate Esterase AT1G05310 48.993 9.75e-102 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3254 K01051 - gmx:100802832 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3254 5 81571281 81574717 Ssu5g3254 5 81571281 81574717 ECH