Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3249 atgtCGTGGCAAACTTATGTTGATGAACATTTGATGTGTGATATTGATGGCACAGGCCACCACCTCTCTGCCGCTGCCATCATCGGCCATGATGGTTCCATTTGGGCTCAAAGCTCTTCTTTTTCTCAGATTAAATCTCAAGAGGTCATTGATATCATGAAAGATTTCGACGAACCGGGTCATCTTGCTCCTACAGGTTTGCACCTTGGGGGAATCAAATACATGGTCATCCAAGGAGAGTCAGGAGCTGTCATTCGTGGGAAGAAGGGATCTGGAGGCGTCACCATAAAGAAAACTGGTCAAGCTTTAGTTTTTGGTGTCTATGAGGAACCTGTGACACCTGGACAATGCAATATGGTTGTTGAGAGGTTGGGAGATTACCTCATTGATCAAGGTCTCTAG 402 0.4527 MSWQTYVDEHLMCDIDGTGHHLSAAAIIGHDGSIWAQSSSFSQIKSQEVIDIMKDFDEPGHLAPTGLHLGGIKYMVIQGESGAVIRGKKGSGGVTIKKTGQALVFGVYEEPVTPGQCNMVVERLGDYLIDQGL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3249 133 PANTHER PROFILIN 1 133 - -
Ssu5g3249 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Ssu5g3249 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Ssu5g3249 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Ssu5g3249 133 SMART prof_2 1 133 IPR005455 GO:0003779
Ssu5g3249 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Ssu5g3249 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Ssu5g3249 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Ssu5g3249 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Ssu5g3249 133 CDD PROF 2 132 IPR005455 GO:0003779
Ssu5g3249 133 Pfam Profilin 1 132 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3249 Ssu-Chr5 81499191 81501052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3249 1 133 Cytoskeleton Gene Families AT4G29340 81.343 1.29e-81 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3249 K05759 - gmx:100784770 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3249 5 81499191 81501052 Ssu5g3249 5 81499191 81501052 ECH