Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3246 ATGGAGAACGCCTGGATCCTTCTCCTTCTGCTGCTGCTGCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATCGGTGTGGGTGTTGGTGTCGGTGGCAGAGGTGGCCTAGGTGTTGGTATTGGTATTGGCATTGGCAATGGGGGCACCGGTGGTGCTGCTAGCACCCCGGGGCCCTCTGGATCGCGAGTGGCAAACCTCAACAATGCATTCACAGCACTCCAGGCATGGAAATCTGCCATCACTGATGACCCTTTGAAGATTTTAGACACTTGGGTTGGTCCCAATGTGTGCTCCTACAAAGGTGTCTTCTGTGCAGATTCTCAGGACGATGCCGGAATTGCCACATCAGCTGCAACCGAGTCCTCTGTTGTTGCGGGAATAGATCTCAACCATGCAAACCTCCAAGGCACTCTTGTCAAAGAGCTATCTTTGCTCTCTGATATCACTCTTTTCCATCTCAACAGCAACAGGTTCTCTGGCACAGTTCCTGACACATTCAGAGACTTGACCTCCCTCCAGGAGTTGGACCTCAGCAACAACCAACTCTCGGGCCCTTTCCCCACGGTCACTTTATCCATGCCAAGCCTTGTCTACTTGGACCTCAGATTCAACAACTTCTCCGGAAACCTTCCTGGGGAACTCTTCAACAAGAAACTGGATGCAATATTTCTCAACGACAACAATTTTGGAGGTGAAATTCCAGACAACTTGGGAAATTCACCTGCCTCTGTGATAAACTTGGCCAACAACAAGTTGAGTGGGAGCATCCCTTTTAGCTTTGGCTTCATGAGTCCAAGACTAAAGGAGATTCTCTTCCTTAATAACCAATTGACAGGTTGTATTCCCCTAGGAGTGGGGATCTTCACTGAGATGCAAGTTTTTGATGTGAGCTTCAACTCACTCATGGGCCATTTGCCCGACACAATGAGTTGCTTGCAGGAAATAGAGGTTCTCAATTTGGCACATAACAAGCTCTCTGGGGAATTATCTGATGTGGTGTGCTCCTTGAGAAGCCTGTTAAATCTAACCGTTGCTTATAATTTCTTCTCCGGGCTAAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATTCCTGGAAGGGATATGCAGAGACCCCAACCAGAGTGCTCTGTGATCCCTGGTGGTAATCTCAATTGTCTTAGAATCCCTACTCCGAAGCCTCTTGTTTGCGCCGCTCTCGCTGGAACTTTGTCTAAGCTCACAAATTCACGTTCCTCTTCTCCCTGA 1272 0.4858 MENAWILLLLLLLLLLHSNAAKGAIGVGVGVGGRGGLGVGIGIGIGNGGTGGAASTPGPSGSRVANLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGVFCADSQDDAGIATSAATESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNSNRFSGTVPDTFRDLTSLQELDLSNNQLSGPFPTVTLSMPSLVYLDLRFNNFSGNLPGELFNKKLDAIFLNDNNFGGEIPDNLGNSPASVINLANNKLSGSIPFSFGFMSPRLKEILFLNNQLTGCIPLGVGIFTEMQVFDVSFNSLMGHLPDTMSCLQEIEVLNLAHNKLSGELSDVVCSLRSLLNLTVAYNFFSGLSQECSRLFNVGFDFSDNCIPGRDMQRPQPECSVIPGGNLNCLRIPTPKPLVCAALAGTLSKLTNSRSSSP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3246 423 Pfam Leucine rich repeat 152 207 IPR001611 GO:0005515
Ssu5g3246 423 PRINTS Leucine-rich repeat signature 313 326 - -
Ssu5g3246 423 PRINTS Leucine-rich repeat signature 173 186 - -
Ssu5g3246 423 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 423 - -
Ssu5g3246 423 PANTHER LRR/EXTENSIN 1 423 - -
Ssu5g3246 423 Gene3D Ribonuclease Inhibitor 68 243 IPR032675 -
Ssu5g3246 423 Pfam Leucine rich repeat N-terminal domain 68 105 IPR013210 -
Ssu5g3246 423 Gene3D Ribonuclease Inhibitor 244 383 IPR032675 -
Ssu5g3246 423 SUPERFAMILY L domain-like 71 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3246 Ssu-Chr5 81459308 81460579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3246 67 387 Leucine-rich Repeat extension Gene Families AT3G24480 52.025 3.75e-106 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3246 - - gmx:100820611 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3246 5 81459308 81460579 Ssu5g3246 5 81459308 81460579 ECH