Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3245 ATGAAGATCGAGGAATTGGACGATGCGGAGTGTAGTAGGGACGAGGAGGAGAAGTGTGAGAGGCAGATTGTGAGCGTTGATGCGAAGAGAGCGTTGGTGGGAGCAGGTGCTCGGATCCTGTTCTATCCCACACTCTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTCTTGTTACTGGGCGCTGTGCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAATGAGCCTTACGAAACCTTGGTGCCATCGTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTGATTCCCACTAGAGATTATCTCTTTGCCCCCTCCTTTGTTGATATCAATCGGGCTGTGCAGTTCATTCACCAGAATGCAACTTGTGGTAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGGAGGAGTACAACAATTGTACTTTGTTATCTGGTCGAATACAAGCACATGACACCTGCTGCTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAAACTATAACAAGCGAAGACCTTGTCCTTTACCATACTCTCCCTCTGGGGATGCAGTTCTTATAACCAAGGCTGATCTTGAAGGCTATCATAGCACGTTTGATGCTGGTATGGAGCTGGCCATTGTTCCTAAAATGCTAAAGACTAGGCCCATGATTGCAAGATTATCTTGCCTGTTTGCATCCTTAAAAGTATCAGGTAGTAGTGTACCAATGACCAGGCGGCTACCGGTTTCCGAGTCGCGTGCTTGCTAA 849 0.477 MKIEELDDAECSRDEEEKCERQIVSVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKKLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQNYNKRRPCPLPYSPSGDAVLITKADLEGYHSTFDAGMELAIVPKMLKTRPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3245 282 PANTHER - 1 282 - -
Ssu5g3245 282 PANTHER OS01G0739200 PROTEIN 1 282 - -
Ssu5g3245 282 Gene3D Protein tyrosine phosphatase superfamily 60 205 IPR029021 -
Ssu5g3245 282 CDD PTPMT1 60 204 IPR044596 GO:0004721
Ssu5g3245 282 Pfam Dual specificity phosphatase, catalytic domain 82 203 IPR000340 GO:0008138|GO:0016311
Ssu5g3245 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 203 IPR029021 -
Ssu5g3245 282 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Ssu5g3245 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Ssu5g3245 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Ssu5g3245 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3245 Ssu-Chr5 81439226 81440839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3245 22 270 Protein tyrosine phosphatase (PTP) family AT2G35680 52.901 1.03e-100 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3245 - - gmx:100817410 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3245 5 81439226 81440839 Ssu5g3245 5 81439226 81440839 ECH