Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3244 ATGAATAAGATGAGCAACATGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCCAAGCTCGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAGTTTGAAGGGAAGCCGGACTGGCTAGGTCTACCAGCGGGAGTGAAGTTTGATCCAACGGACCAAGAACTCATAGAACACCTTGAAGCCAAAGTAGAGGCAAAGAATATGAAATCGCACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGATTAAACAGACACTTCTTCCACAGGCCCTCGAAGGCTTACACAACGGGTACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGGGGAGAAACCCGATGGCACAAGACTGGTAAGACCAGACCAGTGATGGTGAATGGCAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGGAAGAACAGAAAACCCGCGAAGACCAACTGGGTGATGCACCAGTACCATCTGGGCCAGCacgaggaagagaaagagggagaGCTTGTCGTGTCAAAGATATTCTACCAGACACAACCGAGACAATGCAATTGGTCGGACAGAAGTGCCACAACCGGTGAAGGAAGTGGAGACCAACAACCCAACAATGGAAGAAGGGACAGTGGAAGTGGGAGTTGTTCTTCTAAGGAAATTGTTACTCACAGAGATGAAATGTCTGCTGTCGTTGGGGTCCCTCCAATGACAACCTTCAACACTGCCTTGGACATTCAACAACTAAAATCCGACCATTTTGGCTTCATCCCATTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACAGCAAGAGAAGTGCAAGCATCAGGCTCATGCGATGAAGTACACGAACGGCATGTAGCACAtaatcatcaacaacaacagcaaAATCAGCATGCGCACCAACAAATTTCAACCACAGCCTTCCACATCAGCAGGCCTTCGCATCCAatctccaccatcatctctccTCCTCCCCTTCACCATGCATCCATCATCCTAGACGACAACTCCTACCATGTCTCCAGAATAATGCTCCAAAACGAAAATTTCCAGCAACAGCAGCAACAACATCATAGACTAGAAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCCTACTGGCCAGACCCTGGCCAACTGCAGGATCATCATGAGTAG 1338 0.4514 MNKMSNMSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLNRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPAKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGDQQPNNGRRDSGSGSCSSKEIVTHRDEMSAVVGVPPMTTFNTALDIQQLKSDHFGFIPFRKSFDEVGIGEASTAREVQASGSCDEVHERHVAHNHQQQQQNQHAHQQISTTAFHISRPSHPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQQQQQHHRLEGRSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSSYWPDPGQLQDHHE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3244 445 MobiDBLite consensus disorder prediction 216 250 - -
Ssu5g3244 445 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Ssu5g3244 445 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Ssu5g3244 445 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Ssu5g3244 445 MobiDBLite consensus disorder prediction 216 247 - -
Ssu5g3244 445 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Ssu5g3244 445 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 425 IPR044799 GO:0003700
Ssu5g3244 445 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3244 Ssu-Chr5 81420923 81425780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3244 4 434 NAC Transcription Factor Family AT5G56620 53.747 1.07e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g3244 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3244 - - gmx:100794811 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3244 5 81420923 81425780 Ssu5g3244 5 81420923 81425780 ECH