Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3239 ATGATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGCCGCTCCTCCAGGAACCCACGCCGGAGATCTTTTCACCGTACACCGGCAATGCCGATTACTCTCCGTACTCCTTGCAAGAAGCGCTGAGCGCGCTCCAGCACTACGACTCCACCGATGCCGAGTCAGACTCGGAGGTTCCCGCCCGGGAACCGGACGTCCCGGTCGACGCTTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCGCGTGGCAGGTCACACGACTGGACGGAGTGTCCCTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGCGACCCGCGGAAGTACCACTACTCCGGCACCGCGTGCCCCGACTTTCGCAAGGGGAATTGCAAGAAGGGCGACGCGTGCGAGTACGCGCACGGGGTCTTCGAGTGCTGGCTCCACCCCGCGCGTTACCGGACCCAGCCGTGCAAGGACGGGACCAGTTGCCGCCGCCGCGTCTGCTTCTTCGCGCACACGCCGGAGCAGCTTAGGGTTCTGCCGCAGCAGAGTCCCCGGAGCGGCGGCGGGGACTCCTACGACGGGTCTCCTCTGCGGCACGCGATTGAGTCGTCCGTGGCGAAGACGCTCCCGTTTGTGTCGTCTCCCGGGTCGGTGTCGCCGCCGGCGGAGTCGCCTCCGATGTCGCCGATGACTCGTTCGGGGGCTGCGAGTGTCAACGAGATGGTGGCGTCGCTGAGGAACTTGCAACTGGGGAAGGTGAAGTCGTTGCCCTCTTCCTGGAACGTTATGGGGTCTTCCGGGTTCGGGTCTCCGAGGGGACCCGTGATCCGACCCGGATTCTTTAGCCTGCCGACGACCCCGACGCAGGCTCCGGCTCGCGGCGGGGTCAACTATTTTGACCTGTGGGATCAGAGTTGCGAGGAGGAGCCCGTGATGGAGAGGGTGGAGTCTGGGAGGGGCATAAGGGCGAGGATGTTTGAGAAATTGAGCAAAGAGAATTCTCTTGACGGGTCGGGTTCGGGTGCAGTCGGGGCTCCGGATGTCGGCTGGGTTTCGGAGCTTGTGAGCCGTTGA 1089 0.6446 MMLGETHRANPTVHVPPWPLLQEPTPEIFSPYTGNADYSPYSLQEALSALQHYDSTDAESDSEVPAREPDVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSGGGDSYDGSPLRHAIESSVAKTLPFVSSPGSVSPPAESPPMSPMTRSGAASVNEMVASLRNLQLGKVKSLPSSWNVMGSSGFGSPRGPVIRPGFFSLPTTPTQAPARGGVNYFDLWDQSCEEEPVMERVESGRGIRARMFEKLSKENSLDGSGSGAVGAPDVGWVSELVSR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3239 362 MobiDBLite consensus disorder prediction 217 238 - -
Ssu5g3239 362 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Ssu5g3239 362 PANTHER UNKEMPT FAMILY MEMBER 7 360 IPR045234 -
Ssu5g3239 362 Gene3D - 121 184 - -
Ssu5g3239 362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 360 - -
Ssu5g3239 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
Ssu5g3239 362 MobiDBLite consensus disorder prediction 1 33 - -
Ssu5g3239 362 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Ssu5g3239 362 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Ssu5g3239 362 MobiDBLite consensus disorder prediction 183 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3239 Ssu-Chr5 81213096 81214184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3239 69 260 C2H2 Transcription Factor Family AT5G12850 50.495 2.45e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu5g3239 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3239 - - gmx:100808676 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3239 5 81213096 81214184 Ssu5g3239 5 81213096 81214184 ECH