Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3238 ATGGGAAGAGCTCCATGCTGTGACAAAGCTAACGTGAAAAGAGGGCCTTGGTCTCCTGAAGAAGATGAAACCCTCAAAAACTACCTCAAGAAACATGGCACGGGTGGTAACTGGATAACTCTCCCACAAAAAGCAGgcCTTAAGCGCTGTGGGAAGAGTTGTCGTCTGAGATGGCTGAACTATCTCAGGCCTCATATCAAGCATGGAGGTTTCACTGATGAGGAAGACCAAGTTATCTGCACCCTTTATGCCACCTTAGGAAGCAGGTGGTCCCTTATAGCTGCTCAGTTACCTGGGAGAACAGACAATGATGTGAAAAACCATTGGAACACtaagttaaagaaaaagtttttggcACCAAACACCAATGCCACTGGCAACACTGTTTGTCAGTTCTCAACTTCCACTACTCCTCAGCGTCAAGCTGAAGACTGTGTCTTTGATCATGAGAACTCAGCTGAGTCCCATGTTTTGGGTTTGGAGCAAACACCAATTCCAGTTCCTTCACCATTGCCTTTAGGATCTGATGTTTCAGGTCTTGGCAGCAGTTGTAGTGTACCAGTACTATCCAATGACGTCTCAGTTCTTGCAAATTCAACTTCCTTGGCAAAAAATGAGACCCAATGGTTTGGTTATCGTGACAATGAAGGTGAAGATGAAGCATTTTTGCTTGATTTTGTGTATGAAGATTTGCTGCATAATGGGTTTGTTTCTCAAGATAAAAGCAGCGAAGTTCCCCCATCATCTGGCTAA 753 0.4329 MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICTLYATLGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAPNTNATGNTVCQFSTSTTPQRQAEDCVFDHENSAESHVLGLEQTPIPVPSPLPLGSDVSGLGSSCSVPVLSNDVSVLANSTSLAKNETQWFGYRDNEGEDEAFLLDFVYEDLLHNGFVSQDKSSEVPPSSG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3238 250 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu5g3238 250 CDD SANT 71 113 IPR001005 -
Ssu5g3238 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ssu5g3238 250 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu5g3238 250 PANTHER OS09G0431300 PROTEIN 1 151 - -
Ssu5g3238 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu5g3238 250 CDD SANT 16 62 IPR001005 -
Ssu5g3238 250 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu5g3238 250 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ssu5g3238 250 PANTHER OS09G0431300 PROTEIN 1 151 - -
Ssu5g3238 250 SMART sant 67 115 IPR001005 -
Ssu5g3238 250 SMART sant 13 64 IPR001005 -
Ssu5g3238 250 Gene3D - 70 144 - -
Ssu5g3238 250 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu5g3238 250 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3238 Ssu-Chr5 81198265 81199461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3238 1 119 MYB Transcription Factor Family AT5G57620 79.832 3.49e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g3238 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3238 K09422 - gmx:778160 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3238 5 81198265 81199461 Ssu5g3238 5 81198265 81199461 ECH