Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3230 ATGGAGGGGCTTTATGGGCACTGCACCGGATGCGGGTCAGCTAATGGCCATGCGCTCTTGAAGCTGTCAAATGCTAACAAGACAATTGAAGTGGGAGTTTTTACTGGATACTCTCTTCTCCTCACCGCACTCGCCATTCCAGATGATGGAAAGATTATGGCCCTGGATCCTGACAGAAAAGCCTATGAGATAGGACTACCATTCATTAAAAAGGCTGGGGCAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTTTACCTGTTCTTGATAAACTCTTAGAAGATGAGAGCATGATTCTGTTACTTTCACGTTACTGCCACAACAATCCTTCGAATAAGGAAACTTTTGACTTTGCCTTCGTTGATGCTGACAAAGACAACTATTGGAATTACCACGAGCGGCTTCTTAAACTGGTAAAGATTGGTGGGTTAATCATCTATGATAACACTCTGGGATGGAACTGTTGCCTGGCCTGA 477 0.4486 MEGLYGHCTGCGSANGHALLKLSNANKTIEVGVFTGYSLLLTALAIPDDGKIMALDPDRKAYEIGLPFIKKAGAEHKIDFIESPALPVLDKLLEDESMILLLSRYCHNNPSNKETFDFAFVDADKDNYWNYHERLLKLVKIGGLIIYDNTLGWNCCLA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3230 158 Gene3D Vaccinia Virus protein VP39 13 155 IPR029063 -
Ssu5g3230 158 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 152 IPR029063 -
Ssu5g3230 158 PANTHER O-METHYLTRANSFERASE-RELATED 19 153 - -
Ssu5g3230 158 PANTHER CAFFEOYL-COA O-METHYLTRANSFERASE 19 153 - -
Ssu5g3230 158 Pfam O-methyltransferase 18 154 IPR002935 GO:0008171
Ssu5g3230 158 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 158 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3230 Ssu-Chr5 81130131 81131845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3230 19 158 Monolignol Biosynthesis Gene Families AT4G26220 64.286 1.35e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3230 K00588 - gmx:100792717 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3230 5 81130131 81131845 Ssu5g3230 5 81130131 81131845 ECH