Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3229 ATGGGTGTTGCACCTAATGTGGGGCAGCTAATGGCCTTGTTTTTGAAGCTTTTAAATGCTAAAAAGACAATTGAAGTGGGAGTTTTTACTGGATACTCTCTTCTCCTCACTGCATTCACCATTCCTAGTGATGGAAAGATTATAGCCATGGATCTAGACAGAGAAGCTTATGAGATAGGACTACCATTCATTAAAAAGGTTGGTGTAGAACACAAGATTGACTTCATAGAGTCTCTAGCGTTACTAGTCCTTGATAAACTCTTAGAAGATACTTCTTTCAAAAGATTAAATCAAAGCTTAAAAGGCCCACCTCAAATAAACAAGTACTCTTTAATTTTGAGGGTTAGCCCTGCAAATGAAAGGACTTTTGACTTTGCCTTCATTGATGCTGACAAAAACAATTATTGGAATTATCACGAGAGGCTTATCAAATTGGTCAAGATTGGTGGGATAGTTGCCTACGATAACACACTGTTGGGAGGAACTGTTGCCTTGCCTGAAAAGGCAGTTTCAGAACCGAAAAGAGAATGGAGACGATTATCACTTGCTTTCAACAAAGCCATTTTAAAGGATTGTCGTATTGAAATTACTTTCGTTTCAATAGGTGACAGAGTCATTATTTGCAAGTGCATTCGTTGA 639 0.3803 MGVAPNVGQLMALFLKLLNAKKTIEVGVFTGYSLLLTAFTIPSDGKIIAMDLDREAYEIGLPFIKKVGVEHKIDFIESLALLVLDKLLEDTSFKRLNQSLKGPPQINKYSLILRVSPANERTFDFAFIDADKNNYWNYHERLIKLVKIGGIVAYDNTLLGGTVALPEKAVSEPKREWRRLSLAFNKAILKDCRIEITFVSIGDRVIICKCIR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3229 212 Gene3D Vaccinia Virus protein VP39 1 210 IPR029063 -
Ssu5g3229 212 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 208 IPR029063 -
Ssu5g3229 212 PANTHER O-METHYLTRANSFERASE-RELATED 1 212 - -
Ssu5g3229 212 Pfam O-methyltransferase 121 209 IPR002935 GO:0008171
Ssu5g3229 212 Pfam O-methyltransferase 1 92 IPR002935 GO:0008171
Ssu5g3229 212 PANTHER METHYLTRANSFERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 1 212 - -
Ssu5g3229 212 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 211 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3229 Ssu-Chr5 81123241 81124836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3229 1 209 Monolignol Biosynthesis Gene Families AT4G26220 52.632 1.77e-75 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3229 K00588 - gmx:100795229 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3229 5 81123241 81124836 Ssu5g3229 5 81123241 81124836 ECH