Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3222 atgagcagcCAAAAGGGTCGTCATGAAGAAGAGATGGGTACCTCGGAAACCACCGGTAAAGTGGTTGTGGTTGCAGTTAAAGCTTCTAGAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAGCCAGGGGATTGCATTAAGCTGTTGGTTGTCATTCCGGCTCTTTCCTCAAGCAAGAGGGTATGGGCACTTTCAAGATTTGCTACTGATTGTACCTCTAGTCATTGGAGATCCAGTTTAGGAACTGCTTCAGATCAGAAAGAAGTTATTACAAATTCCTGTTCTCAATTAGTACTGCAACTCCATGACTTTTATGATCCAGAGAAGATAAAGATCAGAGTAAAGATTCTTTCTGGTTCTTTATGCGGAGCGGTGGCTGCTGAAGCCAAGAGAGTGCAGTCAAGCTGGGTTATATTGGACAAAAAATTAGAACATGAAAAGAAATACTGCATGGAGCAGCTGCATTgcaatattgtaattatgaaacgGTCTCGGCCAAAGATTCTGCGCTTGAATTTGAACAGTTCACCTAAGATGGAACTAAACATGGCTTGTCCATTGGTACTCACAAGAAACTACAAAGACAACTCTGAACATGCAGATATAATTAGAGGTCCAGCTGTTACTCCTGCTAGTAGTCCTGAACAAGGGTCACCACTATTGACTGCAACTGATATTGGAACATCATCCATATCAAGCTCAGATCCCGCAACTTCACCATTTTTCCACTCTGACAATTATGAGAGACAAAGGAGAGGTTATCCCTTTGTTCATGAGGGACTGACAAACCTAGAGGATATTGAGTCTGACTCAGAGAGTGAAAAGCTAAGTATGTCATCCAAGAGTTCATATTTTCAGCCTTGGATTCCAAATGTAATTTGCATGGATGGTGATTTCTCAAAACATGAAGACAACAAGCAAAGATCCAGTGACAAGACTTTGGCTTCTGCCTATGAAGCTTTGCTTCAGAAATTTTCAAAGTTGGATCAAGATCCTATCCTGGGAATGCTTAATTGTAAACTTGACGTGAACTTAAGCAAAAGTGTTAGAGAAGCAATTTCACTGGCCAAAACTTCACCTCCTGGACCTCCCCCATTGTGCTCCATTTGTCAGCACAAGGCGCCTGTGTTTGGCAATCCACCAAGGTGGTTTACATTTGCTGAATTGCAACTTGCCACGGGTGGTTTTTCACAAGCAAACTTCTTGGCTGAAGGTGGTTTTGGTTCTGTACACCGCGGTGTCCTGCCTGATGGGCAAGTCATTGCTGTCAAGCAGTATAAATTAGCCAGTGCTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAGGTCTTAAGCTGTGCACAACATCGTAATGTTGTGATGCTAATTGGGTTCTGTGTGGAGGATGGAAGAAGATTGCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTATGGACGAAAGCCGAATGTACTGGAATGGTCTGCACGGCAAAAAATTGCAGTTGGAGCAGCTCGTGGTTTAAGATACCTTCATGAAGAATGTAGGGTGGGTTGTATTGTGCACCGTGACATGCGGCCAAACAATATCCTCctcactcatgattttgaaGCTTTAGTAGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTGATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGACGTGTATTCATTTGGGATAGTATTACTGGAGCTTGTCACAGGAAGGAAAGCAGTGGATATAAACCGGCCCAAGGGCCAGCAATGTCTAAGTGAATGGGCACGCCCATTGCTTGAAAAACAAGCCATTTATAAACTAGTAGATCCGAGCTTAAGGAACTGCTATGTTGATCAAGAGGTCTATCGCATGCTGCAATGTTCCTCTTTGTGTATCGGACGGGATCCTCATTTAAGGCCTCGAATGTCTCAGGTGCTCAGGATGCTGGAAGGTGACATTATCATGTGA 2034 0.4248 MSSQKGRHEEEMGTSETTGKVVVVAVKASRDISRTALVWALTHVVQPGDCIKLLVVIPALSSSKRVWALSRFATDCTSSHWRSSLGTASDQKEVITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVAAEAKRVQSSWVILDKKLEHEKKYCMEQLHCNIVIMKRSRPKILRLNLNSSPKMELNMACPLVLTRNYKDNSEHADIIRGPAVTPASSPEQGSPLLTATDIGTSSISSSDPATSPFFHSDNYERQRRGYPFVHEGLTNLEDIESDSESEKLSMSSKSSYFQPWIPNVICMDGDFSKHEDNKQRSSDKTLASAYEALLQKFSKLDQDPILGMLNCKLDVNLSKSVREAISLAKTSPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKLASAQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKPNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEKQAIYKLVDPSLRNCYVDQEVYRMLQCSSLCIGRDPHLRPRMSQVLRMLEGDIIM 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3222 677 PANTHER OS01G0253100 PROTEIN 17 677 IPR045271 GO:0004714|GO:0006468
Ssu5g3222 677 CDD STKc_IRAK 407 673 - -
Ssu5g3222 677 SUPERFAMILY Protein kinase-like (PK-like) 381 672 IPR011009 -
Ssu5g3222 677 Gene3D Phosphorylase Kinase; domain 1 373 476 - -
Ssu5g3222 677 Pfam Protein tyrosine and serine/threonine kinase 405 671 IPR001245 GO:0004672|GO:0006468
Ssu5g3222 677 ProSitePatterns Tyrosine protein kinases specific active-site signature. 522 534 IPR008266 GO:0004672|GO:0006468
Ssu5g3222 677 Gene3D Transferase(Phosphotransferase) domain 1 477 676 - -
Ssu5g3222 677 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 17 677 - -
Ssu5g3222 677 ProSiteProfiles Protein kinase domain profile. 401 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3222 Ssu-Chr5 80978727 80983216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3222 360 667 Trihelix Transcription Factor Family AT1G68690 50.321 4.28e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Ssu5g3222 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3222 - - gmx:100305413 1283.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3222 5 80978727 80983216 Ssu5g3222 5 80978727 80983216 ECH