Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3221 ATGGGGAGGAAGTGCTCACATTGTGGAAACATAGGACATAATTCAAGGACCTGCACATCTTTGAGAGGCACTACCACTACTTTCGTTGGACTTCGCCTCTTCGGCGTGCAGCTAGACGCTAGTGTTACCATCAAGAAAAGCTTTAGCACGGACTCCTTACCCTCgtcatcatcttcttcattttcttcatcaagAATAACCATTGATGAACATTCTGACCGAACCTCTTTTGAGTATCTATCAGATGGTCTCATAGGACGAGCCCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACACCGAATATTCCTTGTTGGACTGGAGAAGCTGGGAAGGGGTGACTGGAGGGGAATCTCTAGAAACTTTGTGACTACAAGAACCCCAACACAAGTGGCAAGCCATGCTCAGAAGTACTTTCTTCGACTGGAAACTATAGATAAGAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTTGCAGCAACAACTCCAACATAGGTTCTAATCCAGCTTCAGTTCATCAACAAGATGAGTCTAAATGTGAGGTTAAGAATAATGATGCCACTTTGTCGTTGCTAGGGAGTATACCCTATTTTCAACAAGAAATCAAATCAGATTATAAGCAAGAAACtcttgataatttaaatttctctcatcAAGTTATTCAATCGGCTGCAGAACATCAAGCTGCAGTTCCTAATTTGGAGCTCACTCTTGCAGCCCCCAAGGCAAAGACCCTGCAGGAACAAAACCAATCATCCCCTTCTGCTCCATTCCTGCTTGGGCCTATTAGAGTGACTTAA 807 0.4164 MGRKCSHCGNIGHNSRTCTSLRGTTTTFVGLRLFGVQLDASVTIKKSFSTDSLPSSSSSSFSSSRITIDEHSDRTSFEYLSDGLIGRAQERKKGVPWTEEEHRIFLVGLEKLGRGDWRGISRNFVTTRTPTQVASHAQKYFLRLETIDKKKRRSSLFDLVCSNNSNIGSNPASVHQQDESKCEVKNNDATLSLLGSIPYFQQEIKSDYKQETLDNLNFSHQVIQSAAEHQAAVPNLELTLAAPKAKTLQEQNQSSPSAPFLLGPIRVT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3221 268 CDD SANT 96 141 IPR001005 -
Ssu5g3221 268 ProSiteProfiles SANT domain profile. 97 145 IPR017884 -
Ssu5g3221 268 SUPERFAMILY Homeodomain-like 90 145 IPR009057 -
Ssu5g3221 268 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 143 IPR006447 GO:0003677
Ssu5g3221 268 ProSiteProfiles Myb-like domain profile. 89 141 IPR001005 -
Ssu5g3221 268 Pfam Myb-like DNA-binding domain 96 141 IPR001005 -
Ssu5g3221 268 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 262 - -
Ssu5g3221 268 SMART sant 93 143 IPR001005 -
Ssu5g3221 268 Gene3D - 95 148 - -
Ssu5g3221 268 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Ssu5g3221 268 MobiDBLite consensus disorder prediction 247 268 - -
Ssu5g3221 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
Ssu5g3221 268 PANTHER TRANSCRIPTION FACTOR KUA1 1 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3221 Ssu-Chr5 80957050 80958420 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu5g3221 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3221 - - gmx:778052 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3221 5 80957050 80958420 Ssu5g3221 5 80957050 80958420 ECH