Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3220 ATGAGGTTAACGTCATCTGCGGTTCTCAACCTTCTCATTCTCTGCGATCTGCTTCTCTGTCTTCCCtcgttctctttctctctcctcgcCGCGAACGCGGAGCCGGAGCCGGAGCTTCTCCTCGCCGGAACCAACGCAACCGCCGTCGTTAATGCCTCGCTTGCGAGATCCGACGAGGATAGCTTCGCGAACATGATTGATCGGGCTCTTGAAAGAGAGTTCCCCGAGAATGAGCAGAATGAAGGTACCGATCCTGGTGGTTTCAACAACAGCGTTTCTGAACAGCAGGCTGTTTTGGAAACTGTGGCCAGAGTTAAGCCCAAGAAAAATGAGAGCAAAGAGGAAAAGTCATTTCAGTTCCATGATGTTTTCAATTTGGATAATGAGAATAGGGCAGAGGATATGCCAACTTTAATTGATCGAAAGGACAACGTCTTTATCATATCCAATCCCAAGTCAAAGTATCCAGTTCTTCAATTAGACTTGAGATTGATATCAGATCTTGTGGTTGTCATTGTCTCTGCAACCTGTGGTGGCATTGCCTTTGCTTGTGCTGGACAACCGGTGATGACTGGATACCTGCTAGCAGGATCAATCATTGGACCAGGAGGTTTGAGTTTTGTTAGTGAAATGGTCCAAGTTGAGACAGTTGCTCAATTTGGTGTCATCTTTTTGCTCTTTGCACTGGGCTTAGAGTTTTCAACAACAAAGCTTCGAGTTGTTCGAGCAGTGGCTATTCTTGGAGGTCTACTCCAAATTTTCTTACTTATGTGCTTGTGTGGAATAACAGCTTCATTATGTGGTGGTAAATCATCTGAAGGAATATTTGTTGGTGCATTTCTATCCATGTCTTCAACAGCTGTGGTCTTAAAATTCTTAATGGAAAGGAATAGCGTCAATGCCCTTCATGGTCAGGTTACAATTGGGACTCTGATACTGCAGGATTGTGCTGTTGGTTTGCTCTTTGCGCTGCTTCCTGTTTTGGGTGGAACATCAGGTGTTCTTCAGGGAGTAGTATCCATGACTAAGTCGTTGGtgatcttaattacatttttggccATTTTGTCAATATTATCTCGTACTTGTGTGCCATGGTTCCTTAAGCTTATGATAAGCTTATCCTCTCAGACCAATGAACTTTATCAATTGGCATCAGTGGCATTCTGCCTACTTGTTGCTTGGTGTAGTGATAAGCTGGGTTTAAGCCTTGAACTAGGTTCTTTTGCTGCGGGAGTGATGATATCAACAACAGATCTTGGTCAACATACACTTGAACAAGTTGAGCCAATTCGCAACTTTTTTGCTGCTCTGTTCTTGGCCAGCATTGGGATGCTTATACATGTCCATTTCCTTTGGAATCATGTCGACATTTTACTGGCAGCTGTTATATTGGTGatcattataaaaacaattgtaGCTGCATCTGTTGTCAAGGGGTTTGGATACAACAAGAAGACTTCACTTCTTGTTGGGATGTCCCTGGCACAAATTGGTGAATTTGCCTTTGTTCTTCTCAGTCGTGCTTCAAATCTTCATTTAGTTGAGGGAAAGTTGTATTTATTGCTCCTTGGAACAACAGCTCTTAGTCTGGTGACTACACCTTTGCTCTTCAAGCTAATTCCTGCTGTTGTGCATCTTGGTGCATTGTTGCGGTGGTTCCCTCCTGATAGTCCGGCTGAGATTGGATTTAAAGGGGACAGCTATCGTGCGGACAGTGCTAAGCGTATTACTTTGATGGTTCAAGGCTCTCATGCttcatga 1761 0.4242 MRLTSSAVLNLLILCDLLLCLPSFSFSLLAANAEPEPELLLAGTNATAVVNASLARSDEDSFANMIDRALEREFPENEQNEGTDPGGFNNSVSEQQAVLETVARVKPKKNESKEEKSFQFHDVFNLDNENRAEDMPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVMTGYLLAGSIIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAILGGLLQIFLLMCLCGITASLCGGKSSEGIFVGAFLSMSSTAVVLKFLMERNSVNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGVVSMTKSLVILITFLAILSILSRTCVPWFLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLGQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVILVIIIKTIVAASVVKGFGYNKKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGALLRWFPPDSPAEIGFKGDSYRADSAKRITLMVQGSHAS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3220 586 Gene3D - 162 545 IPR038770 -
Ssu5g3220 586 PANTHER K(+) EFFLUX ANTIPORTER 6 10 586 - -
Ssu5g3220 586 Pfam Sodium/hydrogen exchanger family 169 538 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu5g3220 586 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 10 586 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3220 Ssu-Chr5 80934159 80943340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3220 7 583 Antiporters AT2G19600 81.475 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3220 - - gmx:100788884 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3220 5 80934159 80943340 Ssu5g3220 5 80934159 80943340 ECH