Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3212 ATGGCGGGTGCCATGGAGAAGGTCGACAAGATTCGCCAAATCGTGCGTCTCAAGCAGCTCATGACGCGCTGGAAGCACATCAGCCTCCGCCGCCGCCGCTCCGCCGCCCTCCCCCAGCATTCCGACGACCCTTCCGCCGCGCGCCGCCCCCCCTCCGGCTTCATCTTCGTCTACGTCGGCCCCGAACGACAGCGTTTCGCCATCCCCGCTCGCTTCCTCAACCTCCCCGTCTTCGACGGCCTCCTCAAAGAAACCGAAGAGGAGTTCGGACTCCGAGGTGACGGCGGTTTGGTCCTCCCGTGCCAAGTAACGTTGTTCTCTAACGTCGTTAAGTACCTCCACAAAGACGAGCACAAGTACGGAAAACTCTCTCTCGAAGACTTCTCCAACATGGTTTCTGACGTGGCCTCCGATTCCTGCAAGGAAAACGTCGTCGTTTTAGCCCCTCTGCTGCAGAAAGCAGAGGTTTGA 471 0.5966 MAGAMEKVDKIRQIVRLKQLMTRWKHISLRRRRSAALPQHSDDPSAARRPPSGFIFVYVGPERQRFAIPARFLNLPVFDGLLKETEEEFGLRGDGGLVLPCQVTLFSNVVKYLHKDEHKYGKLSLEDFSNMVSDVASDSCKENVVVLAPLLQKAEV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3212 156 Pfam Auxin responsive protein 16 113 IPR003676 GO:0009733
Ssu5g3212 156 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 145 IPR003676 GO:0009733
Ssu5g3212 156 PANTHER - 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3212 Ssu-Chr5 80709861 80710331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3212 7 127 Calmodulin-binding Proteins AT3G43120 30.872 1.09e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3212 K14488 - gmx:100793118 249.21