Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3206 ATGGAAGGCTATGAGAAGTACATAGCGCAGGGGGATACCGGTGAAAATGGAGTGATAGTGCCAGCGTGTATTTGTTCGCGCGAGGAATTTCGCGCACGTGGTGGAAAAGGATTATCGCGagttgctgctgctgctgctgctgcaaGAAACGCTTCTTCAACTTCAAGATACGATACGGCTGTGACGAGGAACgttaaaaaaaagcaaaagcgGAAATGTCTTCAGGGGCTGTTTACAACCGATTACATTGTGAGCAACGTGTTACGGAAGGATGGTCCTCCTCTTGGTCAGGAGTTTGATTTTCTTCCTTCTGGACCCAAATATTTCTCTTCTGCTTGTCAAGAGGACCAAGGATCCTCCAAGAGGAGGAAGGTTTCCAAGAGTGCAATTCAAAGTCACTCTGATTGTAATATGAAAGCGCCTGTGAAAAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCCAGAGACCTTCCAATTGGTTTTGGTGTTGCTGGCCAAGAAGTTCCTCTAATCTCAAATTCTATTAGACAGAAACCAGTCCATGAGAAGAACAGGCCACGGAAAACAGTGAATGTGAATGGaatgccaaaaaataaaatgcagaataagagaaataaatcgCAGGATAAGAGGAAACTTTCCATGCAAAGAAGAGtgGGGGAATTGAGCCTATATGTGAGTCAGAATCAGTCATCAAAGGAAAAATGTGAACTAGCTTTGGATAATGCAATATCCGAGGAGAGAATTGATCGAGTTTCAATGttaattgatgatgaagagCTAGAGCTGAGGGAGTTACAAGAAAGAACCAATCTGTTTATGTGTCCTGATCATCTTGCTGCCAGTGGAATGCTTGGCTGGTCACTTTGTAAAGATGTGCTAGTGAAGTTTCCCCCAGATACCGTCAAGATGAAGAAACCTATTCGTTTGCAACCTTGGGACTCCTCTCCAGAAATTgtgaagaaattatttaaggttttccatttcatttataCATATGCTATAATTGCTGATATTTGTCCCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGATTCAATGTTACTTGGCAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTTACTAATGGGTTTTCAcctcatttaaataaatcatgtaACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAAGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTCCGTCAAGTACTTGTTGCTTCTGGATTTGGTTCAAAACAAGGTTCCTTACGTAGAGAGGTCCTTAGCAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAACATCTTGTCAGAGAGAGGAAACATTGGATGCAAAGTATCTGGGCTGGCAAAGGCAATGCAGATTGCTGAGTTAAACCTTGCCAGCACAACAGAGGAACTAGAGTCTTTAATATGTTCCACGCTTTCAAGTGatattactttatttgaaaAGATTTCATCAACTGCATACCGATTGCGTATGAGCACTGTTATGAAGGACAGTGATGAATCTCATTCAGATATGGAGGACTCTGGTAGTGTTGATGATGAACTTAACGACACTGATACGTGTAGCAGTGGTGACGATTTTGAAAGTGATTCAATAAACTCCAGTATAGGAAAATTGAAGCATGCAAAcagtcataaaaataaaaataatatgctgAAAGTATACACTGAAATTGATGAGAGCCATCCAGGAGAAGTGTGGTTGTTAGGACTGATGGAGAGTGAATATTCAGATTTGaacattgaagaaaaattgaatgCATTGGCGGCTTTAACTGATCTTCTTACATCTGGATCCAGCATCAGGATGAAGGATTCAACTAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACGTGGTTCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCTGTTCCATTTTGGAACCAGAAAGTACACTTGAATTCTGATCCCTGTCCGGTAGATTCCTCATCATTAATCTCAAGATTCCATAGTCATGAAGCTTCCTTTGAAAAGGGAAAAGATTCATCTATTTTGCACCCCATTCAGTCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGTAGATGATCCAGGCCACAGGAGGATTTACTTTGAATCTTCTGAAGATGGTCATTGGGAGGTTATTGATACTGAGGAGgccttgtgtgcTTTGTTGTCAGTTCTGGATGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCTTTGGAAAGGAGACAAACATCTCTATGCAGATCTATGTCCAGGATTAATGTTAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAATCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCCACATCTGATGTAGACAACCTGCACCTGACTGAGATTGCTAAAGACTCTTTACCGTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGGAGaggaacaaattcaaaaatggaTCCGTGTTCAAGAATATGATTCCTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAAAAGGTCTTATCTGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGggagaaagaagaaagcaaTACATTTCCTAATCATAAAGTGCTATCATCACAGATTCAATCACTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCTCATAGGCTATGGGTGAAACGACTAAGACGCACCTCAACTTTAGTGGAGCTTTTGCAgGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGGTATGGTTGAAGAAATCATTGCATCTTTTGCATCGATGCCCCATACATCATCTGCCCTTGCTCTGTGGTTAGTGAAGTTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAGAAGCAGGGAATCAGTCAACATGGTCCTTGGCGATAG 3258 0.3809 MEGYEKYIAQGDTGENGVIVPACICSREEFRARGGKGLSRVAAAAAAARNASSTSRYDTAVTRNVKKKQKRKCLQGLFTTDYIVSNVLRKDGPPLGQEFDFLPSGPKYFSSACQEDQGSSKRRKVSKSAIQSHSDCNMKAPVKKHGIGKGLMTVWRATNPDARDLPIGFGVAGQEVPLISNSIRQKPVHEKNRPRKTVNVNGMPKNKMQNKRNKSQDKRKLSMQRRVGELSLYVSQNQSSKEKCELALDNAISEERIDRVSMLIDDEELELRELQERTNLFMCPDHLAASGMLGWSLCKDVLVKFPPDTVKMKKPIRLQPWDSSPEIVKKLFKVFHFIYTYAIIADICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRREVLSKELNLLVNYGLCPGTLKSELFNILSERGNIGCKVSGLAKAMQIAELNLASTTEELESLICSTLSSDITLFEKISSTAYRLRMSTVMKDSDESHSDMEDSGSVDDELNDTDTCSSGDDFESDSINSSIGKLKHANSHKNKNNMLKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLLTSGSSIRMKDSTKVTADCNSSIQLRGSGAKIKRSVVKKPVPFWNQKVHLNSDPCPVDSSSLISRFHSHEASFEKGKDSSILHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRINVNSTGMGSMSHSDQSELDMVTDDSYSPTSDVDNLHLTEIAKDSLPSAGAVVIEAGKKGEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGKRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEESNTFPNHKVLSSQIQSLKAAVYAIESVMPEDALVGAWRKSAHRLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDGMVEEIIASFASMPHTSSALALWLVKLDVIIAPYLDRVHPQKKQGISQHGPWR 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3206 1085 MobiDBLite consensus disorder prediction 186 220 - -
Ssu5g3206 1085 MobiDBLite consensus disorder prediction 538 571 - -
Ssu5g3206 1085 MobiDBLite consensus disorder prediction 114 134 - -
Ssu5g3206 1085 MobiDBLite consensus disorder prediction 538 552 - -
Ssu5g3206 1085 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 606 645 IPR028942 -
Ssu5g3206 1085 ProSiteProfiles DDT domain profile. 325 384 IPR018501 -
Ssu5g3206 1085 MobiDBLite consensus disorder prediction 553 567 - -
Ssu5g3206 1085 Pfam DDT domain 328 381 IPR018501 -
Ssu5g3206 1085 PANTHER OS07G0619600 PROTEIN 30 1076 - -
Ssu5g3206 1085 SMART testlast3 325 384 IPR018501 -
Ssu5g3206 1085 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 723 796 IPR028941 -
Ssu5g3206 1085 Coils Coil 257 277 - -
Ssu5g3206 1085 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 30 1076 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3206 Ssu-Chr5 80606189 80617415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3206 245 645 Homeobox Transcription Factor Family AT1G28420 28.770 3.07e-47 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu5g3206 WSD 9.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3206 - - gmx:100792062 1889.77