LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g3206	ATGGAAGGCTATGAGAAGTACATAGCGCAGGGGGATACCGGTGAAAATGGAGTGATAGTGCCAGCGTGTATTTGTTCGCGCGAGGAATTTCGCGCACGTGGTGGAAAAGGATTATCGCGagttgctgctgctgctgctgctgcaaGAAACGCTTCTTCAACTTCAAGATACGATACGGCTGTGACGAGGAACgttaaaaaaaagcaaaagcgGAAATGTCTTCAGGGGCTGTTTACAACCGATTACATTGTGAGCAACGTGTTACGGAAGGATGGTCCTCCTCTTGGTCAGGAGTTTGATTTTCTTCCTTCTGGACCCAAATATTTCTCTTCTGCTTGTCAAGAGGACCAAGGATCCTCCAAGAGGAGGAAGGTTTCCAAGAGTGCAATTCAAAGTCACTCTGATTGTAATATGAAAGCGCCTGTGAAAAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCCAGAGACCTTCCAATTGGTTTTGGTGTTGCTGGCCAAGAAGTTCCTCTAATCTCAAATTCTATTAGACAGAAACCAGTCCATGAGAAGAACAGGCCACGGAAAACAGTGAATGTGAATGGaatgccaaaaaataaaatgcagaataagagaaataaatcgCAGGATAAGAGGAAACTTTCCATGCAAAGAAGAGtgGGGGAATTGAGCCTATATGTGAGTCAGAATCAGTCATCAAAGGAAAAATGTGAACTAGCTTTGGATAATGCAATATCCGAGGAGAGAATTGATCGAGTTTCAATGttaattgatgatgaagagCTAGAGCTGAGGGAGTTACAAGAAAGAACCAATCTGTTTATGTGTCCTGATCATCTTGCTGCCAGTGGAATGCTTGGCTGGTCACTTTGTAAAGATGTGCTAGTGAAGTTTCCCCCAGATACCGTCAAGATGAAGAAACCTATTCGTTTGCAACCTTGGGACTCCTCTCCAGAAATTgtgaagaaattatttaaggttttccatttcatttataCATATGCTATAATTGCTGATATTTGTCCCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGATTCAATGTTACTTGGCAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTTACTAATGGGTTTTCAcctcatttaaataaatcatgtaACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAAGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTCCGTCAAGTACTTGTTGCTTCTGGATTTGGTTCAAAACAAGGTTCCTTACGTAGAGAGGTCCTTAGCAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAACATCTTGTCAGAGAGAGGAAACATTGGATGCAAAGTATCTGGGCTGGCAAAGGCAATGCAGATTGCTGAGTTAAACCTTGCCAGCACAACAGAGGAACTAGAGTCTTTAATATGTTCCACGCTTTCAAGTGatattactttatttgaaaAGATTTCATCAACTGCATACCGATTGCGTATGAGCACTGTTATGAAGGACAGTGATGAATCTCATTCAGATATGGAGGACTCTGGTAGTGTTGATGATGAACTTAACGACACTGATACGTGTAGCAGTGGTGACGATTTTGAAAGTGATTCAATAAACTCCAGTATAGGAAAATTGAAGCATGCAAAcagtcataaaaataaaaataatatgctgAAAGTATACACTGAAATTGATGAGAGCCATCCAGGAGAAGTGTGGTTGTTAGGACTGATGGAGAGTGAATATTCAGATTTGaacattgaagaaaaattgaatgCATTGGCGGCTTTAACTGATCTTCTTACATCTGGATCCAGCATCAGGATGAAGGATTCAACTAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACGTGGTTCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCTGTTCCATTTTGGAACCAGAAAGTACACTTGAATTCTGATCCCTGTCCGGTAGATTCCTCATCATTAATCTCAAGATTCCATAGTCATGAAGCTTCCTTTGAAAAGGGAAAAGATTCATCTATTTTGCACCCCATTCAGTCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGTAGATGATCCAGGCCACAGGAGGATTTACTTTGAATCTTCTGAAGATGGTCATTGGGAGGTTATTGATACTGAGGAGgccttgtgtgcTTTGTTGTCAGTTCTGGATGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCTTTGGAAAGGAGACAAACATCTCTATGCAGATCTATGTCCAGGATTAATGTTAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAATCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCCACATCTGATGTAGACAACCTGCACCTGACTGAGATTGCTAAAGACTCTTTACCGTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGGAGaggaacaaattcaaaaatggaTCCGTGTTCAAGAATATGATTCCTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAAAAGGTCTTATCTGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGggagaaagaagaaagcaaTACATTTCCTAATCATAAAGTGCTATCATCACAGATTCAATCACTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCTCATAGGCTATGGGTGAAACGACTAAGACGCACCTCAACTTTAGTGGAGCTTTTGCAgGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGGTATGGTTGAAGAAATCATTGCATCTTTTGCATCGATGCCCCATACATCATCTGCCCTTGCTCTGTGGTTAGTGAAGTTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAGAAGCAGGGAATCAGTCAACATGGTCCTTGGCGATAG	3258	0.3809	MEGYEKYIAQGDTGENGVIVPACICSREEFRARGGKGLSRVAAAAAAARNASSTSRYDTAVTRNVKKKQKRKCLQGLFTTDYIVSNVLRKDGPPLGQEFDFLPSGPKYFSSACQEDQGSSKRRKVSKSAIQSHSDCNMKAPVKKHGIGKGLMTVWRATNPDARDLPIGFGVAGQEVPLISNSIRQKPVHEKNRPRKTVNVNGMPKNKMQNKRNKSQDKRKLSMQRRVGELSLYVSQNQSSKEKCELALDNAISEERIDRVSMLIDDEELELRELQERTNLFMCPDHLAASGMLGWSLCKDVLVKFPPDTVKMKKPIRLQPWDSSPEIVKKLFKVFHFIYTYAIIADICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRREVLSKELNLLVNYGLCPGTLKSELFNILSERGNIGCKVSGLAKAMQIAELNLASTTEELESLICSTLSSDITLFEKISSTAYRLRMSTVMKDSDESHSDMEDSGSVDDELNDTDTCSSGDDFESDSINSSIGKLKHANSHKNKNNMLKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLLTSGSSIRMKDSTKVTADCNSSIQLRGSGAKIKRSVVKKPVPFWNQKVHLNSDPCPVDSSSLISRFHSHEASFEKGKDSSILHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRINVNSTGMGSMSHSDQSELDMVTDDSYSPTSDVDNLHLTEIAKDSLPSAGAVVIEAGKKGEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGKRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEESNTFPNHKVLSSQIQSLKAAVYAIESVMPEDALVGAWRKSAHRLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDGMVEEIIASFASMPHTSSALALWLVKLDVIIAPYLDRVHPQKKQGISQHGPWR	1085

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g3206	1085	MobiDBLite	consensus disorder prediction	186	220	-	-
	Ssu5g3206	1085	MobiDBLite	consensus disorder prediction	538	571	-	-
	Ssu5g3206	1085	MobiDBLite	consensus disorder prediction	114	134	-	-
	Ssu5g3206	1085	MobiDBLite	consensus disorder prediction	538	552	-	-
	Ssu5g3206	1085	Pfam	WSTF, HB1, Itc1p, MBD9 motif 1	606	645	IPR028942	-
	Ssu5g3206	1085	ProSiteProfiles	DDT domain profile.	325	384	IPR018501	-
	Ssu5g3206	1085	MobiDBLite	consensus disorder prediction	553	567	-	-
	Ssu5g3206	1085	Pfam	DDT domain	328	381	IPR018501	-
	Ssu5g3206	1085	PANTHER	OS07G0619600 PROTEIN	30	1076	-	-
	Ssu5g3206	1085	SMART	testlast3	325	384	IPR018501	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g3206	Ssu-Chr5	80606189	80617415	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g3206	245	645	Homeobox Transcription Factor Family	AT1G28420	28.770	3.07e-47	183

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Ssu5g3206		WSD	9.5e-14	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g3206	-		-	gmx:100792062	1889.77

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