Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3204 ATGAAAACGCAGCCAGACGGTGCCGCCGCCGTCGCACCCAACGCCGGCGAAGgaggagagaagaaaagcaTAAACGCTGAGCTATGGCAAGCTTGTGCGGGACGGCTTCTCAATCTACCTACGCCTGGAACTCACGTCGTTTACTTCCCTCAAGGCCACAGCGAACAGGTTGCAGCGTCTTTGAAGAAAGATGTGGATGCTCAAATCCCGAACTACTCCAATCTCCCCTCCAAGATACCGTGTCTTGTTCACAATGTCAAATTGCATGCAGATCCAGATACTGATGAAGTATATGCTCAGATGACACTTCAGCCGGTTCCTTCTTTTGACACAGATGCCTTGTTAAGATCAGATATTTCTCTCAGGTCGAGTAAGCCACAACCTGAGTTTTTCTGTAAACAACTGACGGCAAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCCACTCTTgaTTACTCTGTGCAACCTCCTGCTCAAGAACTAGTGGCCTGGGATTTGCACAATGATGTTTGGAGATTCCGCCATATATATCGTGGACAACCAAAACGTCACTTGCTTACAAGTGGATGGAGTCTATTTGTCAATGGAAAAAGGCTTTTAGCTGGAGACTCTATTTTGTTTGTAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCTCCAATTTGTCATCTTCAGTACTATCAAGTGATAGCATGCACATTGGAATTCTGGCTGCAGCTGCTCATGCCATTGCTAACAATAGTCCCTTCACTGTGTTCTATAATCCTAGGGCCAGTCCCTCAGAATTCGTTATTCCTTTAGCCAAGTACTACAAGGCTGTGTATAGCCACCATATATCACCGGGTATGCGCTTTCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGATATATGGGTACAATTATAGGTGTCAGTGATCTGGATCCTGTGAGATGGAAAAATTCACTATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGAGGAAAGGCGGAGTAGGGTCTCAGTCTGGGAAATTGAACCCGTGACTGCTCCATATTTCATCTGCCCACCTCCTTTCTTCAGATCCAAGAGACCTAGACTACTGGGGATGCCAGATGATGAGCCTGATTTCAATAACCTTTCCAAGAGTACAGTGCCTTTGCTTGGTGATGATATGTGCATAAAGGATCCCCAAGCTCTCCCTGGCTTGAGCTTAGTTCAATGGATGAACATACAGCAAAATCCTGCGCTGGCTAGCTCATTACAACAAAATTATGCGCCTTCCATGTCTGGATTGGTTCTGCAAAATCTTCCTGGTGCAGATATTGCAAATCAGCTGGGGTTTTCTACTCCACAAATCTCTCAATCAAACAATGTATCCGTTGATGCTCAGAATATACTTCAGTCTTCCCAGCAACTTGGTCACATTCAGAAGCTACTGTCCACATCCAGTGCATTAGGAATGGTCACGCAGCCGCTGCAGCAGTTGGGTGATATCACTCAACAGCCAAGGAACTTGACAAATCAAACTTTACCACAGAATCAAGTTCACACCCAACTTCTGAATCCCCAGAGTCTTGTCCAAACTAACAATATTCTTCAACAGCAACAATCATCCATTCAAAACCACCAACTGCTTAGAAGTCAGTCTCAGAAACGACCTCAACAGCATCAACAAACTACAATGGGTCAGAATCAACAAAATTCGTTTCAATCCCCTATGCCTGGTCATTATAATCAACAATTACAGATGTCTGATAATCAGGTTCGGCTTCAGTTGTTACAGAAGCttcaacagcaacaacaaaCACTCTTGGCACAACAGTCTGCACTGCAGCAGCCTTCTCAAATTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGATGTAGCACACAACTCTAGTGCCCTAACTCCTGGTCAAGTGCTGGAAATTCCTGCTACGCTTCAAAACTCACTTCCTGAGGCTAATTCTATCACCCATCAGATAACAATGCCTAATAACCAGAAAAATCTTCAATTCTCTCATCTATCTCAGCAACCTGCCTTGCTGTCTGAAATGTCTGGCCATATTGGACTTCCCCCTACAGTTACAACCAATCCACTTTCTGCTTCTGGTGGAAGTCTACTGACTGGAGCAGGGCTATCAGTAATCACTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACCTTGCCAGTGCACTCCCTCCAGTGGTAAGTTCCCAGATCCATAGGAGCACAACAATAGGGGATGACATGGCTCAGTCTGCTGTCACAATCTTGAGTTCAAGTACCCTAGAAACTATGTCATCTAATGCAAACATGGCAAAAGATGTACAGCCAAAATATGAAGTAAAGCCTTCtttaaacatttcaaaaaatcaGAATCAAGGGAATGTTGCCCCTCAGACATACTTGAATGGTGGTGTTGTCCAGACAGACTATTTGGATTCATCATCTTCTACAGCTTCACTTTACCATTTTCAGAGTGATAACAATCCATATTCTTACAATCCACAATTGATGTATTGTAGAGACAATAGTCAAAATGTGGAAGTTCAGGCTAATGCTAGGAGCAATGTTTCGTTTGGCAATAACATTAATGGCCAAATGGGAATGCCACCGAATCTAGATTCTCTTCTAACCAAGGGCACGGTGGGGTTGGGGAAGGATTTGTCAAATAATTTCTCTTCAGGAGGCTTGCTTGGAGActatgaaaataacaaagatGTTCAGCCAGAACTTTCATCTTCAATGGTTTCACAGACGTTTGAAGTCCTTGATATGAGCTTTAATTCAATTGATTCTATGATAAATGGTAGTAGCTTCTTGAATAGGGGTCCAAGGGCTatgccaccgccaccaccacctccgcctccacctccaccaccaccaccacaacaacaacaacaacatcagtTTCAGAGGATGAGAACATATACCAAGGTATATAAACGTGGAGCCGTGGGAAGGTCCATAGACATAACCCGATATTCAGGTTATGAGGAGCTTAAACAGGATCTGGCTCTTAGGTTTGGTATTGAGGGACAGCTGGAGGATCGACAAAGGATTGGCTGGAAACTTGTTTATGTAGATCATGAGAATGATGTTCTGCTTGTGGGAGATGACCCCTGGGAGGAGTTTGTTAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGCAATGGTAGCCTTCCATATCCGGCAGGTAGCAGCTCTGATGGTGGGAATACTTAA 3324 0.423 MKTQPDGAAAVAPNAGEGGEKKSINAELWQACAGRLLNLPTPGTHVVYFPQGHSEQVAASLKKDVDAQIPNYSNLPSKIPCLVHNVKLHADPDTDEVYAQMTLQPVPSFDTDALLRSDISLRSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPTLDYSVQPPAQELVAWDLHNDVWRFRHIYRGQPKRHLLTSGWSLFVNGKRLLAGDSILFVRDEKQQLLLGIRRANRQPSNLSSSVLSSDSMHIGILAAAAHAIANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDPVRWKNSLWRNLQVGWDESTAEERRSRVSVWEIEPVTAPYFICPPPFFRSKRPRLLGMPDDEPDFNNLSKSTVPLLGDDMCIKDPQALPGLSLVQWMNIQQNPALASSLQQNYAPSMSGLVLQNLPGADIANQLGFSTPQISQSNNVSVDAQNILQSSQQLGHIQKLLSTSSALGMVTQPLQQLGDITQQPRNLTNQTLPQNQVHTQLLNPQSLVQTNNILQQQQSSIQNHQLLRSQSQKRPQQHQQTTMGQNQQNSFQSPMPGHYNQQLQMSDNQVRLQLLQKLQQQQQTLLAQQSALQQPSQIQIQDQQRQLLDVAHNSSALTPGQVLEIPATLQNSLPEANSITHQITMPNNQKNLQFSHLSQQPALLSEMSGHIGLPPTVTTNPLSASGGSLLTGAGLSVITDDVPSCSTSPSTNNLASALPPVVSSQIHRSTTIGDDMAQSAVTILSSSTLETMSSNANMAKDVQPKYEVKPSLNISKNQNQGNVAPQTYLNGGVVQTDYLDSSSSTASLYHFQSDNNPYSYNPQLMYCRDNSQNVEVQANARSNVSFGNNINGQMGMPPNLDSLLTKGTVGLGKDLSNNFSSGGLLGDYENNKDVQPELSSSMVSQTFEVLDMSFNSIDSMINGSSFLNRGPRAMPPPPPPPPPPPPPPPQQQQQHQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLALRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGSLPYPAGSSSDGGNT 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3204 1107 MobiDBLite consensus disorder prediction 965 986 - -
Ssu5g3204 1107 CDD B3_DNA 130 222 IPR003340 GO:0003677
Ssu5g3204 1107 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g3204 1107 Gene3D - 990 1084 - -
Ssu5g3204 1107 Gene3D - 295 366 - -
Ssu5g3204 1107 ProSiteProfiles PB1 domain profile. 995 1079 IPR000270 GO:0005515
Ssu5g3204 1107 PANTHER AUXIN RESPONSE FACTOR 14 1094 - -
Ssu5g3204 1107 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
Ssu5g3204 1107 SMART B3_2 131 233 IPR003340 GO:0003677
Ssu5g3204 1107 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu5g3204 1107 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Ssu5g3204 1107 Pfam AUX/IAA family 986 1080 IPR033389 -
Ssu5g3204 1107 MobiDBLite consensus disorder prediction 959 990 - -
Ssu5g3204 1107 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Ssu5g3204 1107 MobiDBLite consensus disorder prediction 559 593 - -
Ssu5g3204 1107 Gene3D - 129 232 IPR015300 -
Ssu5g3204 1107 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 1094 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu5g3204 1107 SUPERFAMILY CAD & PB1 domains 1008 1073 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3204 Ssu-Chr5 80576132 80582040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3204 10 472 B3 DNA Binding Superfamily AT5G20730 65.401 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu5g3204 AUX_IAA 1.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3204 - - gmx:100803302 1791.55