Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3198 ATGCGGTTTCGATTTAGATCCAGATTCATGGGGATTTGCTTCAGCATTGAAGAACAAAACCACCTCTCCGTCTCCGATTCGAACAAGAAGCCTACACCTGCAGGATCAGTAGGTCATGAATCTGGCGCTCCATTGGTTTCAAGTTCGATGAATATCAAAGACCTCCGCGAAGGTGCTGGATACTGCAATGTGGATATTTTCACGTACGAGGAGCTGAGGCTCGCGACGAAGCACTTTCGTCCCGATTTAATTTTAGGAGAAGGAGGCTTTGGAGTTGTATATAAAGGCGTCGTAGACGATGGTGTGAGGTCAGGTTACAAGGTCACTGAGGTCGCCATTAAGGAGCTTAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTCGCGGAAGTTAACTATTTAGGTCAATTCAGTCACCCCAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACATCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAACGAATGAAGATTGCTTTACATGCTGCAAGAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCTATCATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCGAAGCTGTCAGACTTTGGCCTTGCAAAGGATGGGCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACCGGGCATTTGACAGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCGTTAGACAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAGTGGGCCCGCCCactattaaatcataataaaaaacttttgaaaattttagaccCAAAACTAGAGGggcaatatttaaataaaactgcATTAAAGGTGGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCAAAAGGCAGACCGCTAATGAGCCAGGTTGTTGAAATTCTGGAAAACTTTCAGTCAAAGGGGGACAATGAGGAAGATCAAATCCTTCAAAGTGGCGGTAGCAGTATAACCCTTTATGAGGTTCCAAAAGGCAGCAATAGCACTCCAACTTAG 1179 0.4411 MRFRFRSRFMGICFSIEEQNHLSVSDSNKKPTPAGSVGHESGAPLVSSSMNIKDLREGAGYCNVDIFTYEELRLATKHFRPDLILGEGGFGVVYKGVVDDGVRSGYKVTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYLNKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGDNEEDQILQSGGSSITLYEVPKGSNSTPT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3198 392 Gene3D Transferase(Phosphotransferase) domain 1 162 378 - -
Ssu5g3198 392 SUPERFAMILY Protein kinase-like (PK-like) 62 357 IPR011009 -
Ssu5g3198 392 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Ssu5g3198 392 PANTHER OS01G0588500 PROTEIN-RELATED 43 389 - -
Ssu5g3198 392 Gene3D Phosphorylase Kinase; domain 1 55 161 - -
Ssu5g3198 392 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 43 389 - -
Ssu5g3198 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Ssu5g3198 392 ProSiteProfiles Protein kinase domain profile. 79 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3198 392 ProSitePatterns Protein kinases ATP-binding region signature. 85 114 IPR017441 GO:0005524
Ssu5g3198 392 CDD STKc_IRAK 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3198 Ssu-Chr5 80496215 80500290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3198 67 356 Glycoside Hydrolase AT3G07070 52.218 1.80e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu5g3198 PK_Tyr_Ser-Thr 9.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3198 - - gmx:100800465 703.745