Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3193 ATGTTGGAAGGTGGTGCAAAATTCCCGGGAATAATagatctcaacaaaaataataacaactactATGATTTCTCTCAAGGCTTTTACCATAAGCTTGGGGAGGGTACCAACATGTCAATTGACAGCGTTGGGAGCTTACAGACAAGTAACGGTGGAGGATCTGTTGCGATGTCTATTGATAATAGCAGTGTCGGGTCCAATGATTCCCATACTCGCATGTTGGACCACCAAGGGTTGCGGAGGCGTGCCAATGATAACTACTCTGTTGCACATAGTGCCAATCGTCGGGGAAGAGTCACACATGCTTTGAGTGATGATGCTTTAGCTCAAGCTCTAATGGACAATAGTTCTCCGACTGAGGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAAACTGAATATGGGCGAGCCTTTTGCTCAAGGAGCTTTTGGGAAACTCTACAGAGGTACTTACAATGGTGAAGATGTTGCTATCAAAATCTTGGAGAGGCCTGAAAATGATCCAGCAAAGGCTCAATTGATGGAACAACAGTTCCAGCAGGAGGTTATGATGTTGGCTACACTAAAGCATCCTAACATAGTTCGTTTCATTGGTGCGTGCCGCAAGCCAATGGTCTGGTGCATTGTAACTGAGTATGCCAAAGGTGGTTCAGTTCgacaatttttaatgaaacGTCAAAATCGATCGGTTCCCCTCAAATTGGCTGTCAAACAGGCTTTGGATGTTGCAAGGGGGATGGCTTATGTTCATGGCCTTGGATTCATCCACAGGGACTTGAAATCTGataatcttttgatttttggtgACAAGTCGATTAAAATTGCTGACTTTGGAGTTGCCCGCATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAAGTGGATGTATATAGCTTTGGGATTGTTCTATGGGAACTCATCACCGGTATGCTTCCATTTCAGAACATGACAGCAGTACAGGCAGCATTTGCAGTTGTCAACAAAAATGTTCGCCCAATCATACCCAATGATTGCCTACCTGTTCTCCGTGACATCATGACAAGATGCTGGGATCCCAATCCTGATGTTAGGCCACCATTTGCTGAAGTTGTGGGAATGCTTGAGAATGCGGAGACTGAGATCATGACAACAGTTCGGAAGGCCCGGTTCAGGTGTTGCATGACTCAACCAATGACTGCTGACTGA 1251 0.4365 MLEGGAKFPGIIDLNKNNNNYYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLRRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLDNFDEWTIDLRKLNMGEPFAQGAFGKLYRGTYNGEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGFIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNVRPIIPNDCLPVLRDIMTRCWDPNPDVRPPFAEVVGMLENAETEIMTTVRKARFRCCMTQPMTAD 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3193 416 Gene3D Phosphorylase Kinase; domain 1 124 217 - -
Ssu5g3193 416 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 407 - -
Ssu5g3193 416 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3193 416 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Ssu5g3193 416 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672|GO:0006468
Ssu5g3193 416 PRINTS Tyrosine kinase catalytic domain signature 213 226 IPR001245 GO:0004672|GO:0006468
Ssu5g3193 416 PRINTS Tyrosine kinase catalytic domain signature 297 307 IPR001245 GO:0004672|GO:0006468
Ssu5g3193 416 PRINTS Tyrosine kinase catalytic domain signature 251 269 IPR001245 GO:0004672|GO:0006468
Ssu5g3193 416 SMART serkin_6 135 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3193 416 Gene3D Transferase(Phosphotransferase) domain 1 218 412 - -
Ssu5g3193 416 PANTHER SERINE-THREONINE PROTEIN KINASE 2 407 - -
Ssu5g3193 416 Pfam Protein tyrosine and serine/threonine kinase 136 388 IPR001245 GO:0004672|GO:0006468
Ssu5g3193 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Ssu5g3193 416 CDD STKc_MAP3K-like 142 389 - -
Ssu5g3193 416 SUPERFAMILY Protein kinase-like (PK-like) 119 389 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3193 Ssu-Chr5 80359734 80365781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3193 24 416 MAP Kinase Kinase Kinase AT2G24360 80.662 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu5g3193 PK_Tyr_Ser-Thr 6.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3193 - - gmx:100788536 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3193 5 80359734 80365781 Ssu5g3193 5 80359734 80365781 PCT