Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3189 ATGGCAATAGAGTTGGGATGGAAAATATCCCAAGCAAAAGTCAAGGTCCTTTGCGTCAATCGCCGGCTTCGCAAATCGCTTTCCATTACTgCATCAGCAACACAATCACACTGTGCCATGGCCGTGACACCCTCAACCCCTCTCCTCTCCCTTCTCGAACGCCTCCAAGAAACAGCGTTCAAAACCTTCGGCACTTCCAACTTCGATCCAAAAACCTACGTGGACCTGCCTCTCAAGTTCTCCCTGTCGGTTACCGAGGACGCGTTCCAGAAGCTTCCGAGGAACGCCAGCGGGTCCGTACCGGTTGAGGAGTTGAAGCGTTTTCTGGAAGCTTACTTCGGAGGTGCAGGGGACGATCTGGTGCACCTGGACCCACGGGATTTCGTTCCCGAGCCGAAGGGTTTCTTGCCGAAGGTGAAGCACCCCGAGGTGAGGGTCTGGGCCTTGGAGGTCCATTCGCTTTGGAAAAACCTGAGCCGGGAAATATCCGGTGCGGTGAAGGCACAGCCGCACTTGCATACGCTGCTCCCTCTCCCGGCTTCGGTTGTCATTCCCGGGTCGCGTTTTCGCGAGGTTTATTACTGGGATTCCTATTGGGTAATTAgGGGCTTGCTGGCGAGTAAAATGTATGACACTGCTACGGGTATTGTGACCAATCTCATTTCCTTGATAGAAGAATATGGGTTTGTTCTTAATGGCGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACTGTAGCACGGGTGATGTGGAATTAGTTAAAAGATCTCTACCCGCGCTACTGAAAGAGTATGAATTTTGGAATTCAGATATACATAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCACACCTTAAATCGTTATAATGCAATGTGGGACAAACCCAGGCCAGAATCGTCCATAATGGACAAGGCATTTGCTTCCAATTTCTCGAGTGTTTCAGGAAAACAACAGTTTTACCGTGCACTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACCAGATGGATGAGAAACCCGCCTGATTTCACAACATTGGCTACAACATCTGTAATACCTGTTGATTTGAATGCATTTCTACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTACTGGAGATAAAAACACTGCTGAACGGTTCCTGGAAATTTCTGATCTTAGAAAGAAGGCAATGAACTCTGTTTTCTGGAATGCAAACAAGAAACAGTGGCTTGATTACTGGCTCAGCAGTACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCACCAGAATCAAAATGTATTTGCTTCCAATTTTGTTCCTCTGTGGATGAAGCCATTTTACTCAGataCTTCACTTGTGGGTAGTGTTGTTGAAAGTCTCAAAACTTCTGGCCTGCTCCGCGCTGCTGGAGTTGCAATTTCTTTGACTGATTCAGGACAACAGTGGGACTTTCCAAATGGGTGGGCACCGATTCAACACATGCTAGTGGAAGGCCTGCTAAAATCAGGGTTGAAAGAAGCAAGGTCATTGGCTGAGGAAATTGCCATCAGATGGATCACAACCAACTATATTGTCTACAAGAAAACGGGTGTAATGCATGAAAAGTTTGACGTGGAGCATTGTGGAGAATTTGGAGGTGGGGGCGAATATGTACCCCAGACTGGTTTTGGCTGGTCAAATGGAGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA 1773 0.4715 MAIELGWKISQAKVKVLCVNRRLRKSLSITASATQSHCAMAVTPSTPLLSLLERLQETAFKTFGTSNFDPKTYVDLPLKFSLSVTEDAFQKLPRNASGSVPVEELKRFLEAYFGGAGDDLVHLDPRDFVPEPKGFLPKVKHPEVRVWALEVHSLWKNLSREISGAVKAQPHLHTLLPLPASVVIPGSRFREVYYWDSYWVIRGLLASKMYDTATGIVTNLISLIEEYGFVLNGARAYYTNRSQPPLLSAMIYEIYCSTGDVELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIMDKAFASNFSSVSGKQQFYRALASAAESGWDFSTRWMRNPPDFTTLATTSVIPVDLNAFLLGMELNIAFFAKVTGDKNTAERFLEISDLRKKAMNSVFWNANKKQWLDYWLSSTCEEVHVWKNGHQNQNVFASNFVPLWMKPFYSDTSLVGSVVESLKTSGLLRAAGVAISLTDSGQQWDFPNGWAPIQHMLVEGLLKSGLKEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3189 590 Pfam Trehalase 67 581 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 ProSitePatterns Trehalase signature 2. 491 500 IPR018232 GO:0004555|GO:0005991
Ssu5g3189 590 Gene3D - 51 588 IPR012341 GO:0005975
Ssu5g3189 590 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Ssu5g3189 590 PRINTS Glycosyl hydrolase family 37 signature 364 381 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 PRINTS Glycosyl hydrolase family 37 signature 407 423 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 PRINTS Glycosyl hydrolase family 37 signature 227 245 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 PRINTS Glycosyl hydrolase family 37 signature 297 314 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 PRINTS Glycosyl hydrolase family 37 signature 564 577 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 PRINTS Glycosyl hydrolase family 37 signature 484 500 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 PRINTS Glycosyl hydrolase family 37 signature 332 349 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 PANTHER TREHALASE 31 590 - -
Ssu5g3189 590 PANTHER TREHALASE 31 590 IPR001661 GO:0004555|GO:0005991
Ssu5g3189 590 SUPERFAMILY Six-hairpin glycosidases 63 583 IPR008928 GO:0005975
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3189 42 590 Trehalose Biosynthesis Gene Families AT4G24040 60.398 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3189 K01194 - gmx:547539 1041.18