Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3177 ATGGGTGTCCCACAAACTCCAACCACCTCTCCACATCTCTATCCACAAGAACTTCAGCTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCCTCTCTTTCATCACCACCTCTCCACACACTTCCCAGTACTACTAATCCACAAACTACATATCCTTATCCTTCACAACCTTGCCGTTTAGATCTGACAGTGCAATTTCTGGACAAACTTCCAAGAATTTTATTTGATGAGGAATTGAGAACAAGAGATTCAGTATGTTGTGTTTGCCTGGGAGAATTTGAGCTGAAGGAAGAGCTCCTACAAATTCCTTATTGCAAGCATGTGTTTCACATAACCTGCATAAGTAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATGTTCCATCATTCCCTCTAACAAGTTCCTTAATCCAGTACCACCTATTGTATCAGACCCACCACAGCAAGGTGGAATTTTAGGCTCTTCATCACACGTCATGTCATTGCCTCatcaacaagaagaagaagttggTGCTTCCACAAATACCACCATTTTTCAGGGGAATGATGTATTAATTAGACAATAA 636 0.3962 MGVPQTPTTSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHTLPSTTNPQTTYPYPSQPCRLDLTVQFLDKLPRILFDEELRTRDSVCCVCLGEFELKEELLQIPYCKHVFHITCISNWLQSNSTCPLCRCSIIPSNKFLNPVPPIVSDPPQQGGILGSSSHVMSLPHQQEEEVGASTNTTIFQGNDVLIRQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3177 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
Ssu5g3177 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 162 - -
Ssu5g3177 211 SMART ring_2 107 148 IPR001841 -
Ssu5g3177 211 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Ssu5g3177 211 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 162 - -
Ssu5g3177 211 Pfam Ring finger domain 107 149 IPR001841 -
Ssu5g3177 211 MobiDBLite consensus disorder prediction 54 73 - -
Ssu5g3177 211 SUPERFAMILY RING/U-box 85 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3177 Ssu-Chr5 80102755 80104349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3177 8 154 C3H Transcription Factor Family AT4G10150 39.216 6.94e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3177 K19039 - gmx:100806499 351.673