Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3172 ATGGACGATGCTGAAACCAAAGAAAGAATCGAAGAAACTGTTCGCAGGATTTTGCAAGAATCAGACATGGACGAGGTTACTGAGTCTAAGATTCGAAAGCAGGCTTCCGAACAACTTGGCCTCAACTTATCTCAGCCCCACTTCAAAGCCTTCGTGAAACAGGTCGTGAGGGCTTTTCTTCAAGAGAagcaacaagaagaagaagaacaacagcaacaacaacaagatgatgatgatgatgatgaagaagaagaagaagaagaaaagggagGTTCCAAGGGCAAGGAGTACGATGACGAAGGCGATCTCATCATTTGCAAGCTTTCAGAGAAGAGAAAGGTGACGATTCAGGATTTCAGAGGGAAAACATTGGTCTCCATTCGGGAGTATTACAAAAAGGATGGCAAGGAGCTTCCTACTTCCAAAGGAATAAGTTTGACAGAGGAGCAGTGGTTAGCCTTTAAGAAAAATGTGCCTGCCATAGAAAAAGCCATTAAGAAAATGGAGTCACGCAACTGA 519 0.3719 MDDAETKERIEETVRRILQESDMDEVTESKIRKQASEQLGLNLSQPHFKAFVKQVVRAFLQEKQQEEEEQQQQQQDDDDDDEEEEEEEKGGSKGKEYDDEGDLIICKLSEKRKVTIQDFRGKTLVSIREYYKKDGKELPTSKGISLTEEQWLAFKKNVPAIEKAIKKMESRN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3172 172 MobiDBLite consensus disorder prediction 1 30 - -
Ssu5g3172 172 SUPERFAMILY ssDNA-binding transcriptional regulator domain 105 167 IPR009044 GO:0003677|GO:0006355
Ssu5g3172 172 MobiDBLite consensus disorder prediction 71 87 - -
Ssu5g3172 172 Gene3D - 2 63 - -
Ssu5g3172 172 PIRSF RNA_polymII_KELP 1 172 IPR017415 -
Ssu5g3172 172 Gene3D Transcriptional Coactivator Pc4; Chain A 94 171 IPR009044 GO:0003677|GO:0006355
Ssu5g3172 172 Pfam DEK C terminal domain 5 60 IPR014876 -
Ssu5g3172 172 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 171 IPR045125 GO:0003713|GO:0060261
Ssu5g3172 172 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP 4 171 - -
Ssu5g3172 172 SUPERFAMILY DEK C-terminal domain 3 60 - -
Ssu5g3172 172 Pfam Transcriptional Coactivator p15 (PC4) 106 157 IPR003173 GO:0003677|GO:0006355
Ssu5g3172 172 Coils Coil 56 80 - -
Ssu5g3172 172 MobiDBLite consensus disorder prediction 62 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3172 Ssu-Chr5 80039237 80041485 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Ssu5g3172 DEK_C 4.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3172 K25815 - gmx:100305633 244.973