Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3167 ATGGAGGCGGATTTCGTGACGAATGATATGCTCACACTCACACAGGATGCTTTTGATGCCAACGATAATGATGATGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGACGTTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAATAAAGTTGAAGATGATTCATTCTTCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGGGTTGGCAACTATTGAAGGAGATTCTGGTCTCGATACATCAATAGCTTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCGGACAGTACATGGTTATGCCCCAGATGTGTGGTTGATGAAGTTTCTAAAGGAACATCCAATTCAATAGAGAGGACAACCGTGGAATGTAATGCAGATAATAGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACGGCTGTTGTTGTCTCGATGGTTGACAGAACAAAATGGGTTCCTGCAACAAGTGAGAAAAACCTGTTGCCTCTTGAAGTTGGTGGGGATCCAATGACTGAATCATGTATTTTAATGTCTGACACAAATAATCAGCAAAGTGGGGAAGAGAAGACAAATAAATTACCAATCATGGAGGAAGAAGAACTGGAACTGTCTTTATCAAACAATATATCCTGTAGCCTAACTTCTAAATCCTTAGTGCATAATGATTTAAAGAAAAGTGCCAGTGAAGCAAGGAATGAACCAAGTGGATTTGATGGAATCAAGTTATTTGATGAGTCCCACTCCCATATCAAAACTAGTCCATCCAGAATTGAATCTGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTATTTTTTATCTGACAAGAATGAGACAAAAGATCAAGCAACTGATGTACCGTGCTTGAGTCCTGAAGAATGTTTTTCGAAAGGAGATGAAATTGAAGCCAATGCTTGTAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACAGTAATGAACAAGTTCATATAAAAGCGGATGATGGAGATGCTAAGCCTGAACTTCCAGATGAAGTTGcgcaaaagaaaattaaagctaCCTGTAGTCCAATGAGTAGTACTAATGACTCAGCTGATGCTCATCTTTTTGAAAATGCTCAGAAAAACACTGCTTTAAAACATTCTTCAACAAAGGCGATTGTCACATCAGATATAATGAATATAGTTAAAGGGACAAACCGGAGGCTTTCCCAGGGACTTACTGGCACTGATGCTTGTGACAATTTATCTGAAAACAGAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAGTTTCTGATGATGGAGAATCATCCATGATAGTGCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCATAACAAATCCTCTATAAACTTTGAGGATAACCATTTTGATCCAAAGCTTCTTGAAGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATGAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTGCGTGAACATctaacaaagaaaatttttgggacttccaatggaagaagaaagcgTGCCTGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGGTTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGACAGTCCAGAATCAAAGCAAGCTTCTGAATGTCAGGCCAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGGAAAGAGGATGTCAAACCTCTATCTGTGCTTAAAACCATTGCTAACTCACCGCAAACTAAACAAAACCCATCAGAAAAAGCACCAATTCTATCTGTTGATAACAGTACTATTAAAGCAACAgatttaaataatcttttatcaaAGACCAGCGCTTGTtcatctgaaaaaaaaatagagaagacgATTGTACATGGTCCAGTTGGTGATAATTCAGCTTCTGGTAAAGTACGTTTAAACAATCACTCAGAAAGGACATCAGTTTCTTCAGCTGGTGCCAAAACTAGCACAAAGGAGTTAGGTCTTAAATCTAGTTGTATGAAGagtgataaaagaaaatgggcTTTGGAGGTTCTTGCGAGGAAAACAGCTGCCACAAGCAGGATCACAGCAAATGGAAATCAGGAAGACAATGcaatttttaaaggaaattatCCTTTGCTTGCCCAATTGCCAATTGATATGAGACCAGTTTTGGCATCTTGTCGCCACAATAAAATTCCTATATCAGTGAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTACTGAGGAACACAAATCTGGCAGTGATTTGCAGAACTGCAGATACAGAATTAGCTGTTGCAGATgcaattaatattgaaaaagagGTTGCTGACAGATCAAACAGCAAGCTTGTGTATTTGAACCTTTGTTCACAAGAGCTCTTGCATCGCACAAGTAACACAAAAACCAATGTAGCCACAGATACAAGTCCATCAACCTCATCAGCAATGCCTACTGATCAACAATTGGAACTAAATAGTGATGAGCTTTCAACTGACCCTGCTGTTGAAACAGCCTTGAAAAATGCTGGTCTGTTGTCTGATTCCCCACCTGGCAGCCCACATGAGAACAGAGAAATATGTAATGGTGATATATCGGGGCCTGATAATATATTGGAACTGGATTCTCACCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGACGAAGATTACATTGGTGCTAGTGTTACAAAGGTCTCAAATCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTTGGATATTGTGGATTGTGCAGACTCTGAGGGTTCTGAAAGAAATGAAGTGCCAGGAGATGCATCCTGCTTACCAAATTGTCACAATGATGCAGTCCATAGGGATAGGGCTTCTACTACTGATACGGAGATGGGCCAGCCTTCCGTTTCTTCTGAGCTCCTACCCTGTGAGGGTGCTGTTGAGCCGCATGACTCAGAATTTGAAGAATTATATGGCCCGGACAGAGaaccatttataaaaaaatttccagaCAGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTGCCATATTGACGAAAAACATGTCTTGGACAATGCAGTAAATGCTTCAGAACTGGGGAATGGGAATCTCACAGAAAAAGTTTCTGTTCCTACCATCAGTGACAAATCTTCTAATATATCTGAGACTGGTGAAAATATCcaaaggaaggaagagaaatCTGATGTCACTGCTAAGCAGACTGAATCTGTAGATCATGTAACTAAAAAGGTTGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAAGTGGGCGGTTGCCAAAACGACTGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAACagaaaaaattga 3876 0.3847 MEADFVTNDMLTLTQDAFDANDNDDVAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSFFRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDEVSKGTSNSIERTTVECNADNSNSECHAEDSFSGKVSVSVADTGETAVVVSMVDRTKWVPATSEKNLLPLEVGGDPMTESCILMSDTNNQQSGEEKTNKLPIMEEEELELSLSNNISCSLTSKSLVHNDLKKSASEARNEPSGFDGIKLFDESHSHIKTSPSRIESDMGLHLGLSVGYFLSDKNETKDQATDVPCLSPEECFSKGDEIEANACKDNARVAGGKRKHADYSNEQVHIKADDGDAKPELPDEVAQKKIKATCSPMSSTNDSADAHLFENAQKNTALKHSSTKAIVTSDIMNIVKGTNRRLSQGLTGTDACDNLSENRGNMAGLRVKKIMKRVSDDGESSMIVQNLRKEIREAVHNKSSINFEDNHFDPKLLEAFRAAITGPKTELVNKLSPAAMKAKKSMLQKGKVREHLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKVETLKSVLDLLRKGSDSPESKQASECQAKNPILSRLYLADTSVFPRKEDVKPLSVLKTIANSPQTKQNPSEKAPILSVDNSTIKATDLNNLLSKTSACSSEKKIEKTIVHGPVGDNSASGKVRLNNHSERTSVSSAGAKTSTKELGLKSSCMKSDKRKWALEVLARKTAATSRITANGNQEDNAIFKGNYPLLAQLPIDMRPVLASCRHNKIPISVRQTQLYRLTERLLRNTNLAVICRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTSNTKTNVATDTSPSTSSAMPTDQQLELNSDELSTDPAVETALKNAGLLSDSPPGSPHENREICNGDISGPDNILELDSHPELDIYGDFEYDLEDEDYIGASVTKVSNPKQEQNESKVKLVFSTMNLKKLDIVDCADSEGSERNEVPGDASCLPNCHNDAVHRDRASTTDTEMGQPSVSSELLPCEGAVEPHDSEFEELYGPDREPFIKKFPDSESRSLHGDGKTETLSVANDCHIDEKHVLDNAVNASELGNGNLTEKVSVPTISDKSSNISETGENIQRKEEKSDVTAKQTESVDHVTKKVEAYIKEHIRPLCKSGVITADQYKWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3167 1291 PANTHER RING FINGER PROTEIN 41, 151 103 1288 - -
Ssu5g3167 1291 SMART PHD_3 131 183 IPR001965 -
Ssu5g3167 1291 SUPERFAMILY FYVE/PHD zinc finger 148 185 IPR011011 -
Ssu5g3167 1291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 95 IPR013083 -
Ssu5g3167 1291 MobiDBLite consensus disorder prediction 923 942 - -
Ssu5g3167 1291 PANTHER RING/U-BOX PROTEIN 103 1288 - -
Ssu5g3167 1291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 183 IPR013083 -
Ssu5g3167 1291 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Ssu5g3167 1291 Pfam PHD-finger 148 183 IPR019787 -
Ssu5g3167 1291 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Ssu5g3167 1291 SMART ring_2 123 182 IPR001841 -
Ssu5g3167 1291 SMART ring_2 33 71 IPR001841 -
Ssu5g3167 1291 SUPERFAMILY RING/U-box 24 78 - -
Ssu5g3167 1291 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Ssu5g3167 1291 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3167 Ssu-Chr5 79971253 79986222 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3167 33 93 C3H Transcription Factor Family AT3G58030 38.095 3.48e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu5g3167 PHD 4.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3167 - - gmx:100808102 2219.51