Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3159 ATGCTTGTATTGCAATTTGATAGTGATAGTGGACATTTATGTGCAATAAAAGAAGTCAGGGTTGTCTGTGATGACCAAACATCAAAAGAATGCCTTAAACAACTTAATCAAGGAGAAGAAACACTTTTCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCCTCATTGAGCCtgttattcaaaattatacaGGCAGATTGTCTCGGGACTTTCCTATCTTCACGGGAGAAACACAGTACATAGtattgacaagtttttattttcacagGGATATCAAAGGGGCTGACATACTAGTTGATCCTGATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATatcttgtaa 381 0.3412 MLVLQFDSDSGHLCAIKEVRVVCDDQTSKECLKQLNQGEETLFVYLEYVSGGSIHKLLQEYGALIEPVIQNYTGRLSRDFPIFTGETQYIVLTSFYFHRDIKGADILVDPDGEIKLADFGMAKHIL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3159 126 Gene3D Transferase(Phosphotransferase) domain 1 3 126 - -
Ssu5g3159 126 SUPERFAMILY Protein kinase-like (PK-like) 7 124 IPR011009 -
Ssu5g3159 126 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 38 125 - -
Ssu5g3159 126 Pfam Protein kinase domain 35 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3159 126 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 38 125 - -
Ssu5g3159 126 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 4 37 - -
Ssu5g3159 126 ProSiteProfiles Protein kinase domain profile. 1 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3159 126 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 4 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3159 Ssu-Chr5 79863479 79864798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3159 4 125 MAP Kinase Kinase Kinase AT1G53570 55.944 3.12e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu5g3159 Pkinase 6.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3159 K04421 - gmx:100813122 160.614