Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3152 ATGGCCCCCTCAGCCATATTATGTGCTCTCTGTCTCTTCCTTGTCCATCTTCAAACCACAAGAGGGAATAAACAGGTTACTTGCAATAGCTTGAGATGCGGCGGTATAGATATTCAGTTTCCTTTCGGTCTGAAAGGATCCAACCAAGATAGTCGCTGCTGGTATTACCCAACTCCCTATTTCCAACTTTCGTGCATCAACCGTACCCGAACCATTCTCAACCTCCCTCGTTTCGGGGACTTAATCGTGAATAGTATCGATTACGAATCCCAAAGCATCCAAGTCAACGACCCAGATGGGTGTCTACCAAAACGGTTCTTACACAAGTGGAACCTTTCGGGTTCACCTTTCATGTTGAACCCTTTGATTTACGGAACAAGTCCTTATAACCTCACCTTCCTCCGTTGCCCATCCAACGTGACCGACTCGTCTCAATTCCCGTTAGTGCCAATTTCGTGCCTAAGCGACAACAACAACTACTCGGTCATAGTTTCGTGGTCACAACCAATTGTGTCGTCACCTATGTCTCAACGGTGCGAGGTGATGTCGTGGGCTTATGTCCCTCTGCCGAGGTTGGACATGCCCATGTGGCCCTTCTGGCCCGACCTTAACACTGACCTTGAGTTGGTGTGGACCGAACCCAATTGTAGGGACTGTGCACTTAGTGGCGAACTTTGTGGGTTCTCTAAAAGGATTCAAGTCGGGTGCTTCCCTAGGAATTCCCGGAAAGGTCTTTCAAGAAGTGCCAGTTATGGCTTAGCTATAGGAGTGGGAATACCTGGACTCTTGTGTCTAATTGGGGTTTCCTGCTTTATTTGCGGTAAGGTCAGGATGCTGACCCATCGCCCACGGAGCACAGATTTTTCGGCCACAATTTCCCTAGAACCCATGCCTTTTGTAATGGGGCTTGACGGCGCCACAATTGAAAAGTATCCCAAAACTCTTATTGGGGAGAGTGGGCGCTTATTGAAGCCCACTGACAATACTTGCGCAATATGCCTCTGTGAATATGAACCCAAAGAGACGTTGAGGAGCATACCCGAATGTAACCATTATTTTCACACAGATTGCATAGATGAGTGGCTCAAATTGAATGGCACGTGCCCCCTGTGCAGGAATTCACCGGAGGCATCTTCCAcaacttctttcttttccttgtcTCCCACTTCCTCATTGCCCTCTCCATAA 1188 0.4747 MAPSAILCALCLFLVHLQTTRGNKQVTCNSLRCGGIDIQFPFGLKGSNQDSRCWYYPTPYFQLSCINRTRTILNLPRFGDLIVNSIDYESQSIQVNDPDGCLPKRFLHKWNLSGSPFMLNPLIYGTSPYNLTFLRCPSNVTDSSQFPLVPISCLSDNNNYSVIVSWSQPIVSSPMSQRCEVMSWAYVPLPRLDMPMWPFWPDLNTDLELVWTEPNCRDCALSGELCGFSKRIQVGCFPRNSRKGLSRSASYGLAIGVGIPGLLCLIGVSCFICGKVRMLTHRPRSTDFSATISLEPMPFVMGLDGATIEKYPKTLIGESGRLLKPTDNTCAICLCEYEPKETLRSIPECNHYFHTDCIDEWLKLNGTCPLCRNSPEASSTTSFFSLSPTSSLPSP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3152 395 MobiDBLite consensus disorder prediction 374 395 - -
Ssu5g3152 395 CDD RING-H2_PA-TM-RING 329 372 - -
Ssu5g3152 395 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 393 - -
Ssu5g3152 395 ProSiteProfiles Zinc finger RING-type profile. 330 372 IPR001841 -
Ssu5g3152 395 SUPERFAMILY RING/U-box 323 374 - -
Ssu5g3152 395 SMART ring_2 330 371 IPR001841 -
Ssu5g3152 395 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Ssu5g3152 395 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 393 - -
Ssu5g3152 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 377 IPR013083 -
Ssu5g3152 395 Pfam Ring finger domain 328 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3152 Ssu-Chr5 79805246 79808437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3152 28 375 C3H Transcription Factor Family AT2G46495 36.134 4.39e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3152 - - gmx:100810240 620.928