Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3141 ATGGAGAATGACTGGAGCTGGGAGCAGAACACGCTCATCAGTGAGCTAATTCAGGGGATGGAGGTAGCAAGGAAGTTGAAGGCAGATTTGAGGACGCCGTATTCAGCTGACACAAAGGATTTTCTTGTGCAGAGGATATTATCTTCTTATGAAAAGGCTCTACTGATTCTAAGATGCCATGCATCTGCTTCCGAGTTGCAGGCCATCAGTCAAGCTACAGCAACTTTGTTACCAGAGTCCCCAATATCTGTCCATGGAAGTCCTATGAGCGAGGACGTTGATGGGGCCATCAAGGATCACCAGGAATTTAAACATGATTCAAAGAAAAGAAAGATAATGCCCAAATGGATGGATCAAGTAAGAGTGAGCTGTGAAAGCGGTCTTGAAGGACCACATGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTTGGAGCCAGATATCCCAGAAGTTACTATAGGTGCACCTTCCGCAACACTCAGAACTGTTGGGCCACAAAACAAGTGCAGAGATCAGATGTTGATTCCACAATATTTGACATAACTTACAGAGGCAGGCATACCTGTTCTCAGGGAAACAATGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAACCACACAGTCATAACATTGATATTCGCCATGCACAGGCATCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGGCTGTCAACACAGATAAACTGGACAATGGAGAAATGGCATATCCTTTCACTTTCCCTTCAACTTCATTTGGATGCATGAAACAAGAAAACCACAGCTTGATTCCTTCAGCCCAAGAGAACGAAACCTTCTTGAGCGACTTATACCAAACACATCTGTTGTCTCCAGCAACACCAGAATCACACTATTTCTCATCTCCAACTTTCCAGATGAATGAGTTTGATGGGATCTATAACAAGCCGCATTCGGAATCCGATATCAATGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCAATTCCCAATTTCAATTTCTCACTTGATCCAGCAGAAATTGATCCAAATTTCCCTTTCAATACCCCAGGATTTTTCTCCTGA 1086 0.4319 MENDWSWEQNTLISELIQGMEVARKLKADLRTPYSADTKDFLVQRILSSYEKALLILRCHASASELQAISQATATLLPESPISVHGSPMSEDVDGAIKDHQEFKHDSKKRKIMPKWMDQVRVSCESGLEGPHEDGYNWRKYGQKDILGARYPRSYYRCTFRNTQNCWATKQVQRSDVDSTIFDITYRGRHTCSQGNNAVLPPKSPDKQEKPHSHNIDIRHAQASQESLTKFRNILAVNTDKLDNGEMAYPFTFPSTSFGCMKQENHSLIPSAQENETFLSDLYQTHLLSPATPESHYFSSPTFQMNEFDGIYNKPHSESDINEIISTNTSATNSPIPNFNFSLDPAEIDPNFPFNTPGFFS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3141 361 MobiDBLite consensus disorder prediction 193 214 - -
Ssu5g3141 361 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3141 361 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g3141 361 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3141 361 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g3141 361 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 357 - -
Ssu5g3141 361 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3141 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 357 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3141 Ssu-Chr5 79600238 79601555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3141 6 264 WRKY Transcription Factor Family AT4G23810 45.070 1.67e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g3141 WRKY 4.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3141 - - gmx:100815760 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2936 2 90739366 90740947 Ssu5g3141 5 79600238 79601555 PCT