Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3137 ATGGGTGATACAGTTGCTGAAGTAGTAGCCACAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGAGGCTAACATCATAGCTGGGAAGGTCTCTGAGTCCTCAGCCACACCAATTTCGCCCCCATCCGATAAGGGACAAGTTCCCTCTAAGAAACAAGACTCCAAGAAGCAGCAATCTTTCGAGAAGGAATTGCTGGAGATGCAGGAAATGCTGCAGCAGTTGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGCCAAAGACGAGGCTCTCAAGCAGAAGGAAGAAGAGCTCGAAAACCGTGGCCGCGAGCAAGAGAAGCTTCAGACTGAGCTGAAAAAATTGCACAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAACAAAAGaaggataagaagaaaaaaggatgcTCTGAGAAGAAGAGGCCTTCTCCACCATACATTTTGTGGATGAAAGACCAATGGAATGAGATTAAGAGAACGAACCCCGAGGCAGAATTTAAGGAAATTTCAAACATGCTGGGGGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCATGCTGAGAAAGAAGCTTATTTGCAAGTGATGGCAAAGGAAAAACGTGAGAGTGAGGCAATGAAGTTGCTGGAAGAGGAGCAGAAGCAGAAGACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAGAGGGCAAGAAGAACAAAGAAGGACCCAATGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAACGATAGGCGAGCAGCTCTTCTATCTGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACAGCGGAAGAGTGGAAAAACATGACAGAAGGACAAAGGAGACCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATACCCTAGAAATGGAGGCTTATAAAcagaagaaagaagaggaggCTGCCCATCTCATGAAGGAAGAGGAGGAGCACATGAAACTTCAGAAACAAGAAGCCTTGCAACTgctgaagaagaaggagaaaactgaaaatattatcaagAAAACAAAACAGAATCGtcagaagaagaaacaaaacaagGAAGATAAGAATTCTGATCCAAACAGGCCCAAGAGGCCTCCATCCTCATTCTTCTTATTCAGCAAAGAAGCAAGGAAAAGTTTACAGGAGGAACGAGCGGGAATCAACACCTCAACCCTTAATGCACTTGTTTCGTTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCTAATGCAATGGATACGTACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCTGCTGCAACTGCAAGCCAGGAGCAGAAAACCGAATAA 1446 0.4177 MGDTVAEVVATKRGRGRRALKEKTPSTNEANIIAGKVSESSATPISPPSDKGQVPSKKQDSKKQQSFEKELLEMQEMLQQLRLEKEKTEELLKAKDEALKQKEEELENRGREQEKLQTELKKLHKLKEFKPTMNLPVLKDNEQKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKRTNPEAEFKEISNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVMAKEKRESEAMKLLEEEQKQKTAMELLEQYMQFKQEAEKRARRTKKDPMKPKHPMSAYFLFTNDRRAALLSENKNFLEVPKITAEEWKNMTEGQRRPYEEMAKKNKEKYTLEMEAYKQKKEEEAAHLMKEEEEHMKLQKQEALQLLKKKEKTENIIKKTKQNRQKKKQNKEDKNSDPNRPKRPPSSFFLFSKEARKSLQEERAGINTSTLNALVSLKWKELSEEDRQFWNGQASNAMDTYKKELEEYNKSLAAATASQEQKTE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3137 481 MobiDBLite consensus disorder prediction 338 411 - -
Ssu5g3137 481 CDD HMGB-UBF_HMG-box 269 332 - -
Ssu5g3137 481 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 10 475 - -
Ssu5g3137 481 Coils Coil 317 394 - -
Ssu5g3137 481 MobiDBLite consensus disorder prediction 122 160 - -
Ssu5g3137 481 Coils Coil 64 119 - -
Ssu5g3137 481 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 155 223 IPR009071 -
Ssu5g3137 481 Coils Coil 448 475 - -
Ssu5g3137 481 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 10 475 IPR044601 GO:0003677
Ssu5g3137 481 MobiDBLite consensus disorder prediction 55 69 - -
Ssu5g3137 481 MobiDBLite consensus disorder prediction 139 156 - -
Ssu5g3137 481 MobiDBLite consensus disorder prediction 338 397 - -
Ssu5g3137 481 SUPERFAMILY HMG-box 256 342 IPR036910 -
Ssu5g3137 481 MobiDBLite consensus disorder prediction 10 24 - -
Ssu5g3137 481 CDD HMGB-UBF_HMG-box 398 463 - -
Ssu5g3137 481 MobiDBLite consensus disorder prediction 25 54 - -
Ssu5g3137 481 Pfam HMG (high mobility group) box 156 220 IPR009071 -
Ssu5g3137 481 Pfam HMG (high mobility group) box 398 466 IPR009071 -
Ssu5g3137 481 Pfam HMG (high mobility group) box 269 335 IPR009071 -
Ssu5g3137 481 Gene3D High mobility group box domain 151 234 IPR036910 -
Ssu5g3137 481 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 398 466 IPR009071 -
Ssu5g3137 481 MobiDBLite consensus disorder prediction 1 69 - -
Ssu5g3137 481 SUPERFAMILY HMG-box 393 469 IPR036910 -
Ssu5g3137 481 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 269 335 IPR009071 -
Ssu5g3137 481 Coils Coil 234 265 - -
Ssu5g3137 481 SMART hmgende2 397 467 IPR009071 -
Ssu5g3137 481 SMART hmgende2 268 336 IPR009071 -
Ssu5g3137 481 SMART hmgende2 154 224 IPR009071 -
Ssu5g3137 481 MobiDBLite consensus disorder prediction 253 275 - -
Ssu5g3137 481 CDD HMGB-UBF_HMG-box 157 220 - -
Ssu5g3137 481 Gene3D High mobility group box domain 252 347 IPR036910 -
Ssu5g3137 481 Gene3D High mobility group box domain 380 480 IPR036910 -
Ssu5g3137 481 SUPERFAMILY HMG-box 143 220 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ssu5g3137 HMG_box 5.5e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3137 K09273 - gmx:100814709 617.076