Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3128 ATGGCTTCTTCGTCTTCCATCAAACACACTCACCACATTAACCGCACCAAACTCTTCATGGAAGAAGAAAACCTTCTGAAGAACCATCCCTATCCGAAACTCGTACGAATACGCGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGAGGACGAGCCCTCCGTGTCCTCCACGCGCCGCCGAGTCAAAAACTTCGTTAACGAGATCACCATCGAAGGCGGCGTTAACAACGTTGTTTCCAGGAAAAGAGGAAGGTTTAAGTCCGGCGCCGGCGGTGCTCCGGCGAGTAGGCGGCGGACGGGGGCGTGCTTCGGGAAGAAGTTCCGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATACGGGACCCGTCGCGCCGCGTGCGGCTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTCACCAATTTCATAACGCCGCCGGCGGAGAACAAAAAAACCGGCTACTGCTCCGGCGAGGAGTCTCGCAACAACGACTTGCGTTCCCCCACTTCGGTTCTTCGGTGCTGTTCGGTGTCCGAGGAGGCTGAGTCCGTAACTGCAAACGACGTCGTTGCGAGTGAGTGCGAATATTGGTGCGTTTCGGGGGATAAGTTGAAGTTGGACTCGGAGTCGGTGTTTCCGAATCCTAGCGATGTGGTATTTGACTTCCAAAGCACGCTGGATACGTTCGATGAACTTAACCTACCAGAGAGTATCTTCTTCGCGAATGATTTTACTGGAAGCTTTGTTGGTGAGAGTTTTTTAGATTTGGGATTTACGAGTTGGCATAGAGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTTGTTTCGGATCCCCTTGTTGCTCTTTGA 918 0.5534 MASSSSIKHTHHINRTKLFMEEENLLKNHPYPKLVRIRVTDADATDSSSDEDEPSVSSTRRRVKNFVNEITIEGGVNNVVSRKRGRFKSGAGGAPASRRRTGACFGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAENKKTGYCSGEESRNNDLRSPTSVLRCCSVSEEAESVTANDVVASECEYWCVSGDKLKLDSESVFPNPSDVVFDFQSTLDTFDELNLPESIFFANDFTGSFVGESFLDLGFTSWHRECDNFQDIGDLFVSDPLVAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3128 305 MobiDBLite consensus disorder prediction 41 60 - -
Ssu5g3128 305 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Ssu5g3128 305 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Ssu5g3128 305 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Ssu5g3128 305 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Ssu5g3128 305 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 6 301 - -
Ssu5g3128 305 PIRSF PTI6 2 221 IPR017392 GO:0003700
Ssu5g3128 305 PIRSF PTI6 186 271 IPR017392 GO:0003700
Ssu5g3128 305 SUPERFAMILY DNA-binding domain 108 164 IPR016177 GO:0003677
Ssu5g3128 305 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Ssu5g3128 305 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Ssu5g3128 305 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Ssu5g3128 305 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3128 Ssu-Chr5 79468752 79469669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3128 7 305 AP2-EREBP Transcription Factor Family AT4G23750 42.478 2.98e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g3128 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3128 - - gmx:100813992 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2923 2 90581757 90582682 Ssu5g3128 5 79468752 79469669 PCT