Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3127 ATGGAATTTCTAcccattttctctttcatttcccTTTTCTGTTTGATTCTGTGGCAAGGAAGTGGTGAACCTGTTGAAGATAAGGAGGCTTTGCTTGACTTTGTGAACAAGTTCTCTCCTTCTAGGCCTCTGAATTGGAATGAGAGTTCCCCCATGTGTGCTTCTTGGACTGGAGTGACTTGCAATGAAGACAAGTCCAGAGTAATAGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGACACCATTAGCCGCCTCTCAGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATAAGTGGGCATTTTCCTTCTGATTTTTCCAATCTGAGGAACTTGTCTTTTCTTTATCTTCAGTTCAACAATTTGTCTGGGCCTTTGCCTGATTTCTCAGCCTGGAAGAACCTCACTGTTGTCAATTTGTCCAATAACCATTTCAATGGCAGCATTCCTGCCTCCCTTAACAACTCGACTCAGCTTGCTGGTTTGAACCTTGCAAACAACTCACTTTCTGGTGAAATTCCTGACCTCAAGTTGTCAAGATTGCAGGTGCTGAATTTGTCCAACAACAACTTGCAGGGCAGTGTGCCTAAATCCCTGCTGAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCTTTGGAAGTTTTCCTGCAGTTTCTCCAGCGCCTCAACCGGCTTATGCACCGTCTTTGAAGTCCAGTAAACGTGGAAGGCTCAGCGAAACGGCGCTGCTGGGAATTGTCATTGCTGGTGGTGTTTTAGGCCTTGTGGCATTTGTTTCTTTGATGTTTGTGTGCTGCTCAAGAAGAGGTGATGAGGATGAGGCCTTCAGTGGGAAGTTGCACAAGGGAGAAATGTCTCCGGAGAAAGCAGTCTCAAGGAACCAGGATGCAAATAATAAGCTGGTTTTCTTTGAGGGGTGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTGCTGGGAAAGGGAACGTTTGGTACTGCGTACAAGGCAATACTAGAGGATGCAACCACGGTTGTTGTGAAGAGGTTGAAGGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAGCACATGGAGATTGTAGGAAGCCTTAAGCATGAGAATGTGGTTGAGCTCAAGGCATATTATTATTCCAAAGATGAGAAACTCATGGTATATGATTACTACAGTCAGGGGAGCATCTCTTCCATGTTGCATGGtaaaagaggagaagagaggGTGGCTTTAGATTGGGATACTCGGCTGAAAATAGCCTTAGGTGCTGCAAGAGGCATTTCCCGTATCCACGTTGAGAATGGTGGCAAGCTTGTACATGGCAACATCAAATCCTCAAACATCTTTCTCAATACCAAACAGTATGGCTGTGTGTCTGACCTTGGCCTGGCAACCATATCAAGCTCACTTGCCTTGCCCATCTCACGAGCAGCCGGTTGCCGTGCACCCGAAGTTACAGATACCAGAAAACCAGCACAGCCCTCAGATGTCTACAGCTTTGGTGTGGTGTTACTAGAGCTTCTGACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAGATCATCCACCTTGTGAGGTGGGTTCATTCAGTTGTTCGTGAGGAGTGGACAGCAGAAGTGTTTGACTTAGAGCTGATGAGATATCCGAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTGAGGATGCCTGATCAGAGGCCTAAGATGTCTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATGCAGAGACTCACTCATCATCTGGGAACCAAGCAGAACAACTTAAATTTTCTCAACGTGACCATGGTAACTCTCCTTCCACTCCCTCTTACTTCCCAAGAGGAAGTGAATGA 1911 0.4495 MEFLPIFSFISLFCLILWQGSGEPVEDKEALLDFVNKFSPSRPLNWNESSPMCASWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLSALQTLSLRSNVISGHFPSDFSNLRNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGSIPASLNNSTQLAGLNLANNSLSGEIPDLKLSRLQVLNLSNNNLQGSVPKSLLRFPESAFSGNNISFGSFPAVSPAPQPAYAPSLKSSKRGRLSETALLGIVIAGGVLGLVAFVSLMFVCCSRRGDEDEAFSGKLHKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYYSQGSISSMLHGKRGEERVALDWDTRLKIALGAARGISRIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSSLALPISRAAGCRAPEVTDTRKPAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDAETHSSSGNQAEQLKFSQRDHGNSPSTPSYFPRGSE 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3127 636 Gene3D Transferase(Phosphotransferase) domain 1 401 622 - -
Ssu5g3127 636 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Ssu5g3127 636 Gene3D Ribonuclease Inhibitor 136 226 IPR032675 -
Ssu5g3127 636 SUPERFAMILY Protein kinase-like (PK-like) 329 593 IPR011009 -
Ssu5g3127 636 SUPERFAMILY L domain-like 39 207 - -
Ssu5g3127 636 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Ssu5g3127 636 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
Ssu5g3127 636 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3127 636 Pfam Protein kinase domain 328 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3127 636 PANTHER OS05G0588300 PROTEIN 21 606 - -
Ssu5g3127 636 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Ssu5g3127 636 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
Ssu5g3127 636 MobiDBLite consensus disorder prediction 601 636 - -
Ssu5g3127 636 PANTHER PROTEIN, PUTATIVE-RELATED 21 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3127 Ssu-Chr5 79423528 79426423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3127 16 629 Receptor kinase-like Gene Family AT4G23740 64.960 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu5g3127 Pkinase 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3127 - - gmx:100804799 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2920 2 90532465 90535121 Ssu5g3127 5 79423528 79426423 PCT