Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3115 ATGGGCAACTGCAGCAGCGGCGGAGGCGGCGCCACCACTTACTCCGACGACCCTCCCCGCCACAACGGCATCACCGTCCTCCCTCCGAACTCCATCCCTTCCCCCTCACCCCCTCCCCCGCCGTCCTCCTCCACCTTGGGCCTCGTGCTGGGCCGGCCCATGGAGGACGTGCGGTCCACTTATATCTTCGGGCGCGAGCTGGGCCGGGGCCAGTTCGGCGTGACGTACCTGGTGACCCACAAGGCGACGAAGGAGCAGTTCGCGTGCAAGTCAATCGCCACGCGCAAGCTCATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAACCTCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGCATCATCGCCAAGGGACACTACTCCGAGCGCGCCGCCGCCAACTCCTGCCGCCAGATCGTCACCGTCGTCCATAACTGCCACTCCATGGGCGTCACGCATAGGGATTTGAAGCCTGAGAATTTCTTGTTGCTCAGCAACGACGATGCTTCCCCCCTCAAGGCCACGGATTTTGGTCTCTCCGTATTTTTTAAGCCAGGAGATGTGTTTAGGGACCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGAGAAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCCGGGGTTATATTGTACATTCTGCTTTCTGGTGTTCCGCCTTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCATCAGATCCTTGGCCTTCCGTATCAAGTAGTGCGAAAGATCTGGTCAAGAAGATGCTAAGACCTGACCCTAAAGATCGGCTTTCAGCAGTTGAAGTACTTAATCATCCCTGGATGAGAGTGGATGGAGATGCATCTGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAAAAAGTAGCCCTGAAgGTCATTGCTGAAAACCTTTCCGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACATTTGAAGAGTTGAAAGCTGGTCTCCCAAAACTGGGTAGTAAACTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCCACCATGCACATGAATAGAATGGAAAGAGAGGATCACCTTTATAAAGCCTTTGAATATTTTGACAATGATAAGAGCGGGTACATCACAATGGAAGAGTTGGAATCTGCCCTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCAATGATGAGGAAAGGCAACCCAGACATAACCCACAGACGTCGCAAATAA 1494 0.502 MGNCSSGGGGATTYSDDPPRHNGITVLPPNSIPSPSPPPPPSSSTLGLVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHKATKEQFACKSIATRKLIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAANSCRQIVTVVHNCHSMGVTHRDLKPENFLLLSNDDASPLKATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSVSSSAKDLVKKMLRPDPKDRLSAVEVLNHPWMRVDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDNDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHRRRK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3115 497 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Ssu5g3115 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Ssu5g3115 497 Gene3D Phosphorylase Kinase; domain 1 63 132 - -
Ssu5g3115 497 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 25 490 - -
Ssu5g3115 497 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Ssu5g3115 497 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 490 - -
Ssu5g3115 497 ProSiteProfiles Protein kinase domain profile. 61 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3115 497 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Ssu5g3115 497 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Ssu5g3115 497 MobiDBLite consensus disorder prediction 1 45 - -
Ssu5g3115 497 CDD STKc_CAMK 61 304 - -
Ssu5g3115 497 MobiDBLite consensus disorder prediction 30 44 - -
Ssu5g3115 497 Pfam EF-hand domain pair 423 485 IPR002048 GO:0005509
Ssu5g3115 497 Pfam EF-hand domain pair 353 413 IPR002048 GO:0005509
Ssu5g3115 497 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Ssu5g3115 497 SMART serkin_6 61 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3115 497 Gene3D Transferase(Phosphotransferase) domain 1 133 312 - -
Ssu5g3115 497 ProSiteProfiles EF-hand calcium-binding domain profile. 420 454 IPR002048 GO:0005509
Ssu5g3115 497 SUPERFAMILY Protein kinase-like (PK-like) 38 325 IPR011009 -
Ssu5g3115 497 Gene3D - 313 490 - -
Ssu5g3115 497 SUPERFAMILY EF-hand 344 485 IPR011992 -
Ssu5g3115 497 Pfam Protein kinase domain 63 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3115 497 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Ssu5g3115 497 SMART efh_1 424 452 IPR002048 GO:0005509
Ssu5g3115 497 SMART efh_1 459 487 IPR002048 GO:0005509
Ssu5g3115 497 SMART efh_1 352 380 IPR002048 GO:0005509
Ssu5g3115 497 SMART efh_1 388 416 IPR002048 GO:0005509
Ssu5g3115 497 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3115 Ssu-Chr5 79231564 79237582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3115 47 497 EF-hand Containing Proteins AT4G23650 78.495 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu5g3115 Pkinase 1.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3115 K13412 - gmx:100777096 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2904 2 90378302 90382091 Ssu5g3115 5 79231564 79237582 PCT