Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3099 ATGGATGAGTTTGCGTGCCTGAGGGATTGGGATTTGGAAGCTATTGTGAGAGGAAGCACGGGTGAAGCCACCACCATGGACGATCCAAATCctgatttttcttatttcttctctgAACAAGATGAGCTACTTGATAGCTTCCCCGCATTCTCAGAAACCACGAGGGTCCTTGATGATTTGGAAGAGCTTTACAAACCCTTCTACCCAATTATGCACCCTCTTTCACCGCACACCATCGTTACAACTGCCCTACCTATCCCCATGGAACCCGAACAAGTCAAAGAACTCAAAGCATCGGAAGAGAAAGTAGCTCTACAAGCTTTGAAAGTTCCCGCAGCACCTAAATGTAAAAAAAgCAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGCGACAACAGCGGATGGTCTTGACGATGCATGGGCATGGCGTAAATATGGACAGAAACCAATAAAGGGTTCACCCTATCCTCGAAGCTATTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTAGATCCTGCGGTATTCTTGGTTACCTACACTGCTGAACACAGCCATCCCCACCCAACTCGCAGAAACTCTCTTGCTGGGACCACCCGCAAGAACAATTCCCTGGTTCCTCCTCCAACCACTCGTAACCAAAAGACTTGTTCCTCAAGGACACCTTTGGTGGTGCAGTCCATTGAAGATGGACTTGTAACGAGTGTGCAACAAAGCATGGACTTGAAGAAAGAGGAAGATTTTCTTGAGTGGTTGGATGATGAAGGTGCTCAATTTGGTGATGGTTGGATTCCAACCTCAGATCTAGAGAAACTGATAGGACTTGAGTGCCAGCATTTTGCATTAGATGGCTCCGATTTGACGGATGGTTTTGCGCGCACTTAA 912 0.4616 MDEFACLRDWDLEAIVRGSTGEATTMDDPNPDFSYFFSEQDELLDSFPAFSETTRVLDDLEELYKPFYPIMHPLSPHTIVTTALPIPMEPEQVKELKASEEKVALQALKVPAAPKCKKSKKNQNKSVVKQATTADGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLVPPPTTRNQKTCSSRTPLVVQSIEDGLVTSVQQSMDLKKEEDFLEWLDDEGAQFGDGWIPTSDLEKLIGLECQHFALDGSDLTDGFART 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3099 303 Gene3D WRKY domain 119 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g3099 303 Pfam WRKY DNA -binding domain 138 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3099 303 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 9 268 IPR044810 GO:0003700
Ssu5g3099 303 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 9 268 - -
Ssu5g3099 303 MobiDBLite consensus disorder prediction 200 225 - -
Ssu5g3099 303 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3099 303 MobiDBLite consensus disorder prediction 194 225 - -
Ssu5g3099 303 ProSiteProfiles WRKY domain profile. 132 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3099 303 SUPERFAMILY WRKY DNA-binding domain 132 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3099 Ssu-Chr5 78822314 78823530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3099 1 221 WRKY Transcription Factor Family AT4G23550 48.472 3.40e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g3099 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3099 K13426 - gmx:102663255 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2893 2 90182869 90183724 Ssu5g3099 5 78822314 78823530 PCT