Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3093 ATGGAGATCTGGGTCCCTTGCATGGACCCCGCATCAGGCAATACAAGCCACTTAGGGAACAAGAATACAAAAGAAGGTAAAAGAAGACAACATAACAAGAAGCCCAGAAATATGGGTCACCATTCTTGCTGCAATCAGCAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATCAGATACATTACAACTCATGGATATGGCTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGAtggattaattatttaagacCAGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCACGGGGTCGTAGGAAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTCGAACCGACAATGAAATAAAGAACTATTGGAACTCatggataaaaaagaaaataagaaagccTTCAGCTTCTTCAACCACTATAGCACAAAGTATCGATCATAATTCTTCCCAGTTCAATTACAATTCCAATCTACTAGACCACTTTGCCAACCAAGATAATCTACAAGCAAAACCACAAGTTCAAGAAACCTTGTTCTCTTCAACATGCCCTCTATTTATGTTTGACACTAGTTCACTAGAAGGCACAGCAACAGACTGCAATAGTACTGTGCGAGCAGAACATTTTCAAGATGCTGTGGGTTTGAGCACTGAAACATGGAACTTAAGCCACCATCAAGTTCAGGCACTTCCCCCTCTCACAGTGACTGTAGGCTTGGACACCACAAACTATTTGCCACCATTGATAGAGAACGTGGATAACATGGTCCCAATTGAGGTACAATCTTGTACTATGGACGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCATGAGTTAAATGAGTGGGTAGAAACGCAGCAGCATTGTCCCAACTTTGTTTTTTGGGACAATGTTGAAGGACAGCTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATACACtttctccttttccttcttctttgtgA 1053 0.4074 MEIWVPCMDPASGNTSHLGNKNTKEGKRRQHNKKPRNMGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSASSTTIAQSIDHNSSQFNYNSNLLDHFANQDNLQAKPQVQETLFSSTCPLFMFDTSSLEGTATDCNSTVRAEHFQDAVGLSTETWNLSHHQVQALPPLTVTVGLDTTNYLPPLIENVDNMVPIEVQSCTMDEQGDIALECLQRHELNEWVETQQHCPNFVFWDNVEGQLGGEELAPNSSNVEANTLSPFPSSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3093 350 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Ssu5g3093 350 MobiDBLite consensus disorder prediction 1 42 - -
Ssu5g3093 350 CDD SANT 54 98 IPR001005 -
Ssu5g3093 350 Gene3D - 42 103 - -
Ssu5g3093 350 MobiDBLite consensus disorder prediction 24 38 - -
Ssu5g3093 350 SUPERFAMILY Homeodomain-like 48 145 IPR009057 -
Ssu5g3093 350 Gene3D - 105 179 - -
Ssu5g3093 350 MobiDBLite consensus disorder prediction 330 350 - -
Ssu5g3093 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 98 IPR017930 -
Ssu5g3093 350 Pfam Myb-like DNA-binding domain 51 98 IPR001005 -
Ssu5g3093 350 Pfam Myb-like DNA-binding domain 104 148 IPR001005 -
Ssu5g3093 350 PANTHER MYB DOMAIN PROTEIN 55 38 349 - -
Ssu5g3093 350 CDD SANT 106 149 IPR001005 -
Ssu5g3093 350 PANTHER MYB TRANSCRIPTION FACTOR 38 349 - -
Ssu5g3093 350 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
Ssu5g3093 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Ssu5g3093 350 SMART sant 103 151 IPR001005 -
Ssu5g3093 350 SMART sant 50 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3093 Ssu-Chr5 78664633 78666984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3093 38 334 MYB Transcription Factor Family AT1G63910 52.841 5.00e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g3093 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3093 K09422 K02947 gmx:100803556 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2888 2 90107649 90109539 Ssu5g3093 5 78664633 78666984 PCT