Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3092 ATGATAATTCCGGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCGGAGATTGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAGTCTCGGGAGTACGTGAGGGAGACCTTTGCTTGGATGCACTATTACTGGTTCCTCACCAACGATGGCATCGAGTTTCTCAGAACTTACCTTAATCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAAGCCAAGCCACCTGGCAGGCCTTTTGGTGGCCCACCCGGTGATCGCCCTAGGGGTCCGCCGCGGTTTGAAGGGGAGCGTAGGTTTGGTGACCGTGATGGATACCGTGGAGGTCCCCGGGGACCTGGCGGAGACTTTGGAGGGGACAAGGGAGGAGCTCCTGCTGATTACAGGCCCTCTTTTGGGGGTCCTGGCGGAAGACCTGGCTTTGGTCGTGGATCTGGTAGTTATGGAGCGCCAACCAGCTCAAATCTGCCCTAA 540 0.5407 MIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGSGSYGAPTSSNLP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3092 179 Pfam Plectin/S10 domain 3 94 IPR005326 -
Ssu5g3092 179 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 1 178 - -
Ssu5g3092 179 PANTHER 40S RIBOSOMAL PROTEIN S10 1 178 IPR037447 -
Ssu5g3092 179 Gene3D - 1 104 IPR036388 -
Ssu5g3092 179 MobiDBLite consensus disorder prediction 112 128 - -
Ssu5g3092 179 MobiDBLite consensus disorder prediction 91 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3092 Ssu-Chr5 78644240 78645963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3092 1 179 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 77.778 1.08e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3092 K02947 K09422 gmx:100500445 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2887 2 90101684 90104409 Ssu5g3092 5 78644240 78645963 PCT