Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3089 ATGGCCACAAAAGGGTCAAGCTCTTCTGCTGCTTCTTCAGCTTCAGGGGATTCTAAAATCAAAAGGGTTCTCACCCATGGTGGTAAATATGCACAGTACAATGTGTACGGAAACTTGTTCGAGGTGTCCTCCAAGTACGTGCCTCCTATTCGCCCAATTGGTAGAGGTGTTAATGGCATCGTGTGTGCTGCTGTTAATTCCGAAACACACGAACAAGTTGCCATCAAGAAGATCGGTAACgcatttgataatataattgatgCCAAGAGGACATTGAGAGAAATCAAGCTCCTTCGTCACATGGACCATGAAAATATCATTGCCATCAAGGATATCATACGACCCCCCAAAAAGGAGACCTTTAATGATGTGTACATTGTTTATGAATTGATGGACACTGATCTTCATCATATAATTCATTCTGACCAACCTCTTGGTGAAGAACATTGTCAGTACTTCTTATACCAGCTGTTACGGGGGCTGAAATACGTGCACTCGGCTAATGTTTTGCACCGTGACCTTAAGCCCAGTAACTTACTAATGAATGCAAACTGCGACCTTAAAATTGGGGACTTCGGTTTGGCAAGGACAACATCTGAAACGGATTTCATGACGGAGTATGTTGTCACACGATGGTACCGTGCCCCAGAATTGCTCCTTAATTGTTCCGAGTACACCTCTGCAATTGATGTTTGGTCTGTTGGGTGCATACTTGGGGAAATTATGACAAGAGAACCCTTGTTTCCTGGGAAAGACTATGTTCACCAACTTAGACTTATAACGGAGTTATTAGGTTCACCTGATGATGCAAGCCTTGAATTTCTCCGAAGTGATAATGCCAGAAGATATATTAGACAGCTTCCACAGTACCGGAAGCAAAAATTCTCGTCCAGATTCCCTAACATGTTGCCTGAAGCACTGGATCTGTTAGAGAAGATGCTTATCTTTGATCCAAACAAACGCATTACAGTCGATGAGGCACTATGTCACCCATATCTTTCATCACTCCATAACATCAATGACGAGCAAGTCTGTCCCAGGCCGTTCAGTTGTGATTTTGATCAGCCAATATGCACTGAAGAGCACGTCAAGGAGCTCATTTGGAGGGAATCAGTGAAGTTCAATCCAGATCCACCATGCCAGTAA 1146 0.4284 MATKGSSSSAASSASGDSKIKRVLTHGGKYAQYNVYGNLFEVSSKYVPPIRPIGRGVNGIVCAAVNSETHEQVAIKKIGNAFDNIIDAKRTLREIKLLRHMDHENIIAIKDIIRPPKKETFNDVYIVYELMDTDLHHIIHSDQPLGEEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLEFLRSDNARRYIRQLPQYRKQKFSSRFPNMLPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNINDEQVCPRPFSCDFDQPICTEEHVKELIWRESVKFNPDPPCQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3089 381 SUPERFAMILY Protein kinase-like (PK-like) 50 339 IPR011009 -
Ssu5g3089 381 ProSitePatterns MAP kinase signature. 82 185 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu5g3089 381 Pfam Protein kinase domain 51 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3089 381 CDD STKc_TEY_MAPK 40 376 - -
Ssu5g3089 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 380 - -
Ssu5g3089 381 SMART serkin_6 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3089 381 Gene3D Phosphorylase Kinase; domain 1 30 370 - -
Ssu5g3089 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 380 - -
Ssu5g3089 381 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3089 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Ssu5g3089 381 ProSitePatterns Protein kinases ATP-binding region signature. 53 77 IPR017441 GO:0005524
Ssu5g3089 381 Gene3D Transferase(Phosphotransferase) domain 1 131 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3089 Ssu-Chr5 78625928 78628656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3089 6 376 MAP Kinase Gene Family AT4G01370 80.054 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu5g3089 Pkinase 1.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3089 - - gmx:100807109 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2886 2 90093066 90096291 Ssu5g3089 5 78625928 78628656 PCT