Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3084 ATGGCTCGACAATTGTGTGAAGACAAATCCAAGGACATGACTTCATCAACTGGGTTCTTCTACTCAGATGTGTCATCTAATAACCCAACTATTCAACCCCATCTGATGAACCACATCCAAGGGTTTGTGACCGACCCAGAGGTGTTCAATCTCACTACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCAGCCACACAGTACTGAAAGCAACGGTGTCATGTGGAAAAGTTTCTTCGGCAAACCAGGTCAACACGCGGGTCCTTCCTCTTCCAAAACGATGAACGAGTCTTCTAGCAATTTTTCTAACCAGCATGAGTATAATAATAAGCAAGATTTCACATCAGGGATTTCTGAGACTAGTAGCGAGAACTTAATCGTGGGGGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGTTAATAGTTGATGATTCTTCTTTAAGGTGCGTGTTCCCTTGTGAAGGTAACGAAAGACCGAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACCAACCCTTCAAGTATTGGGTTACAATCTTTTGAGCTAAGACAAACAAGCCATCACCAGCATCTTTCTGATTTTGTTTCAAGAGAGGGGTTTTTTGGAAAATCAGTCGATgctccacaacaacaacaaatgttGCAAGATGGGTATTTGAGTGCTAACAAAGCTGCGAATATTTATCAGGGACATTTCCTAATCAAGATCTCCAAGTTCTTGGTGCCTGCACAGGACCTTCTGAACGAGTTTTGTAGTCTAGGGACAAAGGAAAATGATGTACCAAAGCAAAAGTACTCTCAAAAGAACAAGCAGTGGGAAGAGGGTAACGATGTCGGTTCCTCAAAGAACCATTCTCTTAGCTCACTAGAGTTCGTGGAATTGCAGAAGAGAAAGACAAGGCTGCTCTCGATGCTGGAAGAGGTTGATAGAAGATACAAGCACTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAGGCAGTGGCGGGTAATGGGGCCGCCACAGTTTACTCGGCGTTGGCTTTGAAAGCCATGTCTAAACATTTTAGGTGTTTGAAGGATGGAATTATGGATCAAATTCAAGCCACAAGGAAAGCCATGGGAGAGAAAGATCCCGTTGCACCAGGCACAACAAGGGGCGAAACACCTAGGCTTAGAATCATTGACCAATCACTGAGACAACAAAGGGCCTTTCAGCAAATTAGCATGATGGAAACCCATCCTTGGAGACCCCAGCGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTTGAGCACTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATTCTAGCCCGCCAAACCGGTCTCTCGAGAAGTCAGGTTTCAAATTGGTTTATTAACGCGAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGAGAAGGAGGGGCAACAAAACGACATATCATCCTCGGACGGCGGAGGCGCCAATATTCCCGAAGAGGATCAAAACGCATCGCCTTCAACTCGACGCGAGGATCAGAAGCCAACGCAGGCTCGACTCCTTCGAATCGACTCGGAGTGCGTGTCGTCCATCGTCAACAACCCGGATCACAAAAACGGCACAAAGAGCGGCAAAACAGTCCAAAACGACCACCAAATGAATAATCCCGCGGCGGACACATTCGGGGCGGTGGAGCTTGACTTTTCGTCTTACACGCAGCTCTCCTCCGGCATGGTTCCTTACGATGGCAATCAGAGTTTCCACGGTGGCGGTGGCGTGTCGTTGACGCTAGGGTTACAGCAGCACGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCATCAACTCAGAGCTCGATGTTCTACCCACGGGACCAGATTGAAGAGTGTCAACCGGTTCAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAGTTGCTTCATGATTTGGTAtga 1989 0.4701 MARQLCEDKSKDMTSSTGFFYSDVSSNNPTIQPHLMNHIQGFVTDPEVFNLTTGMEMIGFSKNLQPHSTESNGVMWKSFFGKPGQHAGPSSSKTMNESSSNFSNQHEYNNKQDFTSGISETSSENLIVGGAHDSAPWQENRLIVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTSHHQHLSDFVSREGFFGKSVDAPQQQQMLQDGYLSANKAANIYQGHFLIKISKFLVPAQDLLNEFCSLGTKENDVPKQKYSQKNKQWEEGNDVGSSKNHSLSSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALKAMSKHFRCLKDGIMDQIQATRKAMGEKDPVAPGTTRGETPRLRIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEGQQNDISSSDGGGANIPEEDQNASPSTRREDQKPTQARLLRIDSECVSSIVNNPDHKNGTKSGKTVQNDHQMNNPAADTFGAVELDFSSYTQLSSGMVPYDGNQSFHGGGGVSLTLGLQQHGESGVSLAFPPSTQSSMFYPRDQIEECQPVQYSLLDGEGQNMPYRNLMGTQLLHDLV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3084 662 Pfam Homeobox KN domain 429 468 IPR008422 GO:0003677|GO:0006355
Ssu5g3084 662 SMART prehox3 230 361 IPR006563 -
Ssu5g3084 662 MobiDBLite consensus disorder prediction 264 279 - -
Ssu5g3084 662 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 619 - -
Ssu5g3084 662 SMART HOX_1 412 476 IPR001356 GO:0003677
Ssu5g3084 662 SUPERFAMILY Homeodomain-like 413 478 IPR009057 -
Ssu5g3084 662 MobiDBLite consensus disorder prediction 78 108 - -
Ssu5g3084 662 MobiDBLite consensus disorder prediction 507 522 - -
Ssu5g3084 662 ProSiteProfiles 'Homeobox' domain profile. 409 472 IPR001356 GO:0003677
Ssu5g3084 662 MobiDBLite consensus disorder prediction 480 523 - -
Ssu5g3084 662 Gene3D - 415 477 - -
Ssu5g3084 662 MobiDBLite consensus disorder prediction 85 108 - -
Ssu5g3084 662 MobiDBLite consensus disorder prediction 264 283 - -
Ssu5g3084 662 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 619 - -
Ssu5g3084 662 Pfam Associated with HOX 236 359 IPR006563 -
Ssu5g3084 662 MobiDBLite consensus disorder prediction 489 506 - -
Ssu5g3084 662 CDD homeodomain 412 473 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3084 Ssu-Chr5 78532627 78535769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3084 95 662 Homeobox Transcription Factor Family AT5G41410 45.354 2.16e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu5g3084 POX 6e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3084 - - gmx:100792789 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2880 2 90029361 90029942 Ssu5g3084 5 78532627 78535769 PCT