Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3082 ATGCAAAGCCCATTGTTGCCATTTGAACCTCAAAACTTTTCATCTACAATACATAACGCACCTTGCGGTTGTTCACTCTCTCTTCAATTTTCGCTTCTCAAAGCAAGAAACATAATGGGTTTCCCAGTGGGGTACTCGGAGCTCCTCTTCCCGAAGCTTCTCCTCCACGTCCTCTCCCTCTTGGGCTTCCTCCGGAAGCTGATTTGCACCCTCCTCCGCTTCATGGGCCTCCACGATTTCCTCGAGCCCGACATTGCGTGGCCCGAAACCGATACCCCAGTGCCCGAATTCGAATCCGTGTCGGCGGTGCTGATCCGGGAAATTTTGCCGGTGGTGAAGTTCCGGGAGCTGGTGGACCCGCCGGAGAGCTGCGCGGTGTGTCTGAGCGAGTTCGAGGAAAACGACGACATCAGACGGCTGGCGAATTGTCGACACATATTCCACCGAGGGTGTTTGGACCGTTGGATGGGGTACGATCAGAGAACGTGCCCTCTTTGCAGAACGCCCTTTATACCCGACGATATGCAAGGTGCCTTTATTGACAGACTCTGGGCCGCGTCTGGGATCCCTGAACTTTACGCTGAATATCCTCACGTTGCTGCTTTCTAG 609 0.5402 MQSPLLPFEPQNFSSTIHNAPCGCSLSLQFSLLKARNIMGFPVGYSELLFPKLLLHVLSLLGFLRKLICTLLRFMGLHDFLEPDIAWPETDTPVPEFESVSAVLIREILPVVKFRELVDPPESCAVCLSEFEENDDIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQGAFIDRLWAASGIPELYAEYPHVAAF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3082 202 ProSiteProfiles Zinc finger RING-type profile. 124 167 IPR001841 -
Ssu5g3082 202 SMART ringv_2 123 167 IPR011016 GO:0008270
Ssu5g3082 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 174 IPR013083 -
Ssu5g3082 202 PANTHER RING ZINC FINGER PROTEIN-RELATED 39 196 - -
Ssu5g3082 202 SUPERFAMILY RING/U-box 104 173 - -
Ssu5g3082 202 PANTHER BRH1 RING FINGER PROTEIN 39 196 - -
Ssu5g3082 202 CDD RING-H2 124 167 - -
Ssu5g3082 202 SMART ring_2 124 166 IPR001841 -
Ssu5g3082 202 Pfam Ring finger domain 123 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3082 Ssu-Chr5 78471981 78472589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3082 39 188 C3H Transcription Factor Family AT1G63840 57.419 3.42e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3082 K16281 - gmx:100817079 280.411