Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3079 ATGAGTTCCCCTGAAGACAGTGTCTTTGGTGGACAAATGAGGCGGGTTTGCAGCACAGGAGATTTgcagAACATGAAGGCAAATCACATGTCTCCAACGGAGGCGCTGGTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGccgaggaaagaaaagaaagaatttcaaagtACAGAGCCAAGAGAACCCAGAGGAACTTCAACAAGACCATTAAGTATGCATGCCGAAAGACACTAGCCGATAATCGACCCCGCATACGTGGCAGGTTTGCCCGCAACGACGAGGCCAACGAGACTCCCAAGGCCTCATGTTCAACCCGAGATGAAGATGATGTCGATTTCTGGATTGAAGAATTGCGATTGCAAGAAGAGCAAGACGATGTAACAGTGGGAGCAGAAcaatatttgaagagttatgaAGCTAGTCAGTTTCAGTACTGTGGCTTCTGA 456 0.4342 MSSPEDSVFGGQMRRVCSTGDLQNMKANHMSPTEALVLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEANETPKASCSTRDEDDVDFWIEELRLQEEQDDVTVGAEQYLKSYEASQFQYCGF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3079 151 Pfam CCT motif 53 95 IPR010402 GO:0005515
Ssu5g3079 151 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 148 IPR045281 GO:0009909
Ssu5g3079 151 MobiDBLite consensus disorder prediction 88 109 - -
Ssu5g3079 151 PANTHER CCT MOTIF FAMILY PROTEIN 1 148 - -
Ssu5g3079 151 ProSiteProfiles CCT domain profile. 53 95 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3079 Ssu-Chr5 78438072 78439626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3079 49 101 C2C2-CO-like Transcription Factor Family AT5G24930 50.943 1.40e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g3079 CCT 2.7e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3079 - - gmx:102665661 263.077